Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 >seq7 Length=872730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| ||||||| || | ||| | ||| ||| ||||| ||||||||||| Sbjct 577866 CATACCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATC 577807 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || | || || || |||||||||||||| || ||||| | Sbjct 577806 AGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 577747 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| ||| | || ||| | || || || | | || Sbjct 577746 TGGGATTCCTTCCTTATCTTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTT 577688 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| || | ||||| || || || ||||| Sbjct 577687 CAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 577636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||| || || |||||| ||||| ||||||| || | ||| | ||| ||| ||||| | Sbjct 578633 ATTGTTCTTACATTCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAA 578574 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 |||||||||| | ||| | | || || | || || || |||||||||||||| | Sbjct 578573 TGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTT 578514 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTG 44275 | ||||| | || | |||||||| || ||||| ||| | || ||| | || || Sbjct 578513 GTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTT-TGCCTTAACATTCTCAATTGTA 578455 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 || | | || || |||| || || |||||||| || | ||||| ||| Sbjct 578454 TCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACG 578404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990321027106