Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 134 3e-26 >seq7 Length=872730 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | |||||||| || ||||| | || || || ||||| Sbjct 577867 CAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGAT 577926 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||| || || || |||||||| || || || ||| Sbjct 577927 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 577986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | || ||||| || ||||| | || || ||| | Sbjct 577987 CGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 578046 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | ||| | || |||||||||||| Sbjct 578047 CAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGA 578085 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | |||||||| || ||||| | || || ||| ||||| Sbjct 577639 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 577698 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||| || || ||||||||||| || || || ||| Sbjct 577699 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAA 577758 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | || ||||| || ||||| | ||||| ||| | Sbjct 577759 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 577818 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | || | || ||||||| ||| Sbjct 577819 CAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGA 577857 Score = 120 bits (132), Expect = 7e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 ||| || ||| | |||||||| || ||||| | || || || ||||| || || || Sbjct 578404 CGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGA 578463 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 ||| || || ||||||||| || || ||||||||||| || || || ||||| | || Sbjct 578464 GAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGAT 578523 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||| || |||||||| | || ||||| || ||||| | ||||| ||| | |||||||| Sbjct 578524 CTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGA 578583 Query 178112 ATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || | || | || ||||||| ||| Sbjct 578584 GTCCACTTTACACTTAGTCCTGAGACTTAGA 578614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730922389492