Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq132 102 7e-17 seq332 96.9 3e-15 >seq132 Length=18305 Score = 102 bits (112), Expect = 7e-17 Identities = 370/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || ||||| ||||||||| |||||| | || Sbjct 13786 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGA 13727 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || | | ||| || |||||||| || ||||| |||| ||| ||||||| || Sbjct 13726 TCTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAA 13667 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || || || || || || ||| ||||||||||||| || || || | | || Sbjct 13666 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAA- 13608 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | ||| | |||| || ||| | ||| | |||||| || | | Sbjct 13607 ATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTA 13548 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| |||| ||||| |||| || |||| || | | || || Sbjct 13547 TTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGA-AATT 13489 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || || || || | ||||| | Sbjct 13488 A--AAGAACGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAG 13431 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 |||| ||| ||| |||||||| || | || | | || || || || | || Sbjct 13430 CAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTTGCTGAAAGAATTATT 13375 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 | ||| || || ||||| || | ||||| || |||||| ||||| |||||| | Sbjct 13374 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT 13315 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 13314 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAA 13255 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||||| |||||||||| || |||| || Sbjct 13254 GGTCTCCATGCTGATTTTGCTTGTTTAATATA 13223 >seq332 Length=38429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 24675 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 24616 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| || | || || || Sbjct 24615 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGTATTCCTCCTGA 24557 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 24556 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 24497 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 24496 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGT 24445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760404441920