Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq231 304 2e-77 seq132 228 1e-54 >seq231 Length=56951 Score = 304 bits (336), Expect = 2e-77 Identities = 1198/1858 (64%), Gaps = 44/1858 (2%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62103 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 12805 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 12747 Query 62104 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 12746 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 12687 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 12686 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 12627 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62282 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 12626 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 12568 Query 62283 A-GGT--TTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | |||| |||||| ||| || | | ||||| | | ||| | | |||| Sbjct 12567 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 12508 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 | |||||| ||| |||| | | || | |||||| || ||||| ||| || Sbjct 12507 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 12448 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 ||||| | |||||| ||| ||||| || |||| | || || | |||||| || Sbjct 12447 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 12388 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 12387 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 12328 Query 62520 CCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA---CGGTA 62574 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 12327 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 12270 Query 62575 CAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62634 ||| | |||||| |||||| ||||| || ||| || |||||| | Sbjct 12269 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 12210 Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 | ||||| || | || || || || | ||| || || || | || | ||||| || Sbjct 12209 CGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 12150 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG 62753 |||||| || | ||||||| | | ||| || || | || ||| ||| Sbjct 12149 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAG 12092 Query 62754 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | ||||| ||| || | ||||||| ||||| || | || | |||||| ||| Sbjct 12091 CATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 12032 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 12031 CGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 11972 Query 62873 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTAC 62929 ||| || || || || || | || ||||||||| || | || ||| Sbjct 11971 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 11913 Query 62930 AAAC--ATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 ||| || || | | ||| ||| ||||||||||| ||||| || || | | | Sbjct 11912 CAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAG 11853 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||| ||| || || ||||| | ||||| | |||||||| ||||||| || | Sbjct 11852 TGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGT 11793 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 |||| || | || ||||| |||||| ||| ||||| || || || ||||| |||| Sbjct 11792 TACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAG 11733 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC-T 63164 | || || ||| | | || ||| | || | ||| || | | | Sbjct 11732 CCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGCCTT 11676 Query 63165 CTTTCGTATAGAGTATACA-ATCG-TTC--GAACTCGTCTCCCCAAACATTGTCCAATCT 63220 |||| || | | | || || | ||| || || || |||||||||| | ||||| Sbjct 11675 GTTTCTCAT--ACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCC 11618 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 63277 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 11617 CCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCAT 11561 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 11560 GAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCC 11501 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 11500 GTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAAT 11441 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || || | || || || ||| || ||||| || || ||||| |||| |||||| Sbjct 11440 TGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATA 11381 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 ||| | || ||| ||||| | || || ||| | ||||| || || ||||| || Sbjct 11380 AACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACC 11321 Query 63518 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | | | | ||||||||| | || | || | || || || | ||| || ||| Sbjct 11320 AGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGC 11261 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 |||| ||| |||||| |||| || | ||| ||| || || | |||| ||| Sbjct 11260 GCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAA 11201 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||| |||||||| | || | ||| || | |||||| | || || | || || || Sbjct 11200 ACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGT 11141 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||| |||||| || | | | || || |||| || | || ||||| | ||| Sbjct 11140 AAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATG 11081 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||| || | ||| ||||| | | || || |||||||| |||| |||||||| || Sbjct 11080 AATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAAT 11021 Query 63818 TTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 ||| || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 11020 TTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 10964 >seq132 Length=18305 Score = 228 bits (252), Expect = 1e-54 Identities = 591/879 (67%), Gaps = 39/879 (4%) Strand=Plus/Plus Query 33266 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 12913 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 12972 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| ||||| Sbjct 12973 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 13032 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 |||||| || |||| || ||| |||||||| || || ||||| |||||| Sbjct 13033 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 13092 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | ||||||| || || || | ||| ||||||| || |||||| | | Sbjct 13093 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 13152 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG--ATGT 33560 ||||| || || | || ||| || | || ||| | | ||| || | Sbjct 13153 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC----TCT--AGGAGCTGGTAATTT 13206 Query 33561 AA---TAAATG-TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTAC 33615 || ||| | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 13207 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 13265 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 |||| | ||| |||||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 13266 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 13325 Query 33676 TGGAAGCGAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 | | | | || | | || ||||| | |||||||| || ||| || |||||| ||| Sbjct 13326 TTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 13384 Query 33735 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 13385 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 13443 Query 33794 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 33849 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 13444 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 13499 Query 33850 CATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 ||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 13500 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 13557 Query 33908 AAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA 33966 ||| | || | ||| |||||| || | || || | |||| || || | |||||| Sbjct 13558 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 13616 Query 33967 AATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 | ||||| | || || |||||||| || ||||| || || || |||| ||| ||||||| Sbjct 13617 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 13676 Query 34027 ATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTC 34084 | |||| ||| || || | | |||||| | |||||| | || ||| | ||| Sbjct 13677 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 13734 Query 34085 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||| |||||| || || || || ||||||||||| Sbjct 13735 TTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 13773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809128953280