Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq332 96.9 2e-15 >seq332 Length=38429 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/239 (69%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||||||||| | | || || |||||||| || ||||| || || |||||||| |||| Sbjct 24444 CACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAG 24503 Query 33201 ACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | | ||||| || ||||||||||||||| ||| || | ||| || || || Sbjct 24504 ATA----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCA 24559 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || || || || || || ||| |||| |||| | | ||| || ||| Sbjct 24560 GGAGGAATACCCTCCTTATCCTGGATCTTTGCCT---TTACATTCTCAATAGTATCGGAA 24616 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| ||| |||| || || || ||||| || | |||||| || ||||||||||| || Sbjct 24617 GGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 24675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773419630248