Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq132 163 2e-35 >seq132 Length=18305 Score = 163 bits (180), Expect = 2e-35 Identities = 573/871 (66%), Gaps = 43/871 (5%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | |||||| ||||| || ||||| ||||| |||| | |||||| | Sbjct 12942 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 13001 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| |||| |||||||| ||| | ||| |||| | | || || | | Sbjct 13002 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAA 13057 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTAT 13035 | ||||| ||||||||||| || || || || ||| || || | | ||||| || || Sbjct 13058 AGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAAT 13116 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||| | || || | ||||||| |||| | ||||| ||||| | | Sbjct 13117 AAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGA- 13173 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGG-----ATTTGA---TAGATGCTTAA-ACAT 13146 |||| | | || || ||||| |||| |||| | || |||| | | || Sbjct 13174 TATGATT--TGTT--GTACTCTA--GGAGCTGGTAATTTAAATTTAAGGGCTTTATATAT 13227 Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 | ||| ||||||||| || | |||||||| | ||| || || || || |||||||| Sbjct 13228 TAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGT 13287 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaa 13266 || || |||||||| || |||||||||| |||||| || ||| ||| ||| ||||| Sbjct 13288 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAA 13347 Query 13267 aaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACT 13326 | ||||||||||| || || | || | |||||| || | | | | | | Sbjct 13348 TAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATT 13407 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTC-ATATTTTCTATT 13384 | ||||| || | ||||| | |||||| || |||| || ||| |||| ||| Sbjct 13408 C---ATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGC--TTCAATATGAGAAATT 13462 Query 13385 GCGTTAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 || | || | | |||| ||| ||| | || |||||| |||| || | ||| Sbjct 13463 GCTTCAA--AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATG 13520 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 ||| |||| ||| || | ||| || | ||||| ||| ||||| | |||||| | Sbjct 13521 AATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTT 13580 Query 13503 CTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 | | || || | ||| | |||| || ||||||||||||| |||| || || ||| Sbjct 13581 CCGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCA 13639 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTT 13620 || |||||||| || || | | | || ||||| | | |||| | | | | |||| Sbjct 13640 CTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTT 13699 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||||||| | ||||| || ||| | || ||| |||||| || || | Sbjct 13700 T-CCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTC 13758 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTA 13711 ||| || |||||||| ||| ||||| ||| Sbjct 13759 AGCTTTTTTATACATTGACCAAATATCTTTA 13789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430976748204552