Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq332 199 9e-46 seq480 86.0 1e-11 >seq332 Length=38429 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||||| ||| || || || || ||||| ||||| ||||||||| Sbjct 24446 CCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 24505 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||| | ||| ||||||||||| || || | ||||||||||||||| Sbjct 24506 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 24565 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || |||||||| |||||||| |||||||| || | |||||| |||||| || Sbjct 24566 ATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 24625 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || | ||| || ||||| || || | ||||| ||||| || ||||| || Sbjct 24626 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 24675 >seq480 Length=4824 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || |||||||| ||||| ||||||||||| || ||||| || | ||||| |||| Sbjct 4824 GGTGGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGT 4765 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || || | || |||||||| || || | || || ||||| |||||||| ||||| Sbjct 4764 TCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGT 4706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151382526533808