Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq132 154 2e-32 >seq132 Length=18305 Score = 154 bits (170), Expect = 2e-32 Identities = 495/745 (66%), Gaps = 31/745 (4%) Strand=Plus/Plus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AATTCATTCCTAGAA 92978 |||||||||||| |||||||| || || || | ||| || || | ||||||| || | || Sbjct 13060 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAA 13118 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| |||| ||| |||||| | | | || | | |||| |||||| | | Sbjct 13119 GATCAACAGGAAGAGAGTC-ACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 13177 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACG 93095 |||| | ||||||| | |||| ||| | || | | || || ||||| || | Sbjct 13178 ATTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCT--TTATATATTAAACAAG 13235 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || | ||| | |||||| || || || | ||||| ||||| | || | Sbjct 13236 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 13295 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||| ||||| || |||||||| |||| | ||| ||||||||||| | || | Sbjct 13296 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 13355 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT---GCGGAATTACTGCTGA 93272 |||| || || ||| | | ||| | ||| |||||| | | |||| | | Sbjct 13356 CTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAAT------TCA 13409 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT-AGTGT-TTCGATAGCGTT 93330 ||||||| ||||| || ||||| || || |||| | | | | || || | Sbjct 13410 TCCATTTAGTTGCCCATTCTGCTTTCTTTTT--TACAGCTTCAATATGAGAAATTGCTTC 13467 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAATAC 93388 ||| || | || || | ||| || || || ||| |||| || | | ||||| Sbjct 13468 AAAGAGCATTTGACGTTCTT--TAATTTCAGTAATATATCTATCAATAAGTAATGAATAA 13525 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTTCCGT 93447 ||||| ||| | | || || | ||||| || | || | ||| ||||||||||| Sbjct 13526 GTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTAGCTTCCGG 13584 Query 93448 GATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || || | |||| | || |||| | || | | ||||| | || |||||||| || Sbjct 13585 TATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTG 13643 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || || || | || || ||||||||| | ||| |||||||| | |||| Sbjct 13644 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCC 13703 Query 93567 AATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||| ||| ||||| ||||| | |||||| | ||||||||| ||||| ||| Sbjct 13704 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 13762 Query 93626 TTTTTGTACATATCCCATATGTCTT 93650 ||||| ||||| ||| || |||| Sbjct 13763 TTTTTATACATTGACCAAATATCTT 13787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853310222240