Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq332 127 5e-24 >seq332 Length=38429 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | ||| || || |||||||| ||||| | || || | Sbjct 24455 AGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 24514 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| ||||| ||||| || |||||||||||||||||| | || || || || Sbjct 24515 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCC 24574 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || || || |||| |||| | ||| ||||| | ||| Sbjct 24575 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 24634 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || | ||| ||||| || || ||||| Sbjct 24635 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 24672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179638136989528