Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq231 127 2e-24 >seq231 Length=56951 Score = 127 bits (140), Expect = 2e-24 Identities = 824/1303 (63%), Gaps = 40/1303 (3%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| ||||||| || | || ||||| | ||||| ||||| || ||||||| |||| Sbjct 12428 GATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGG 12369 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | |||||||||||||| | || || ||| ||||||| ||| | || || | | Sbjct 12368 ATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTAT 12309 Query 106053 CCTTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || | |||||| | | ||| ||| |||| | | || |||||||||||||| Sbjct 12308 CTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT-AACTCCCCACATATCAAAT 12250 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | || | || || ||||| | |||| || || | ||| | ||| Sbjct 12249 TGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCGTATTTTTCT 12190 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| || || || | ||| | ||| || |||||| || | ||| Sbjct 12189 GCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTT 12130 Query 106229 ATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACA-TCCGCGA 106286 | || ||| ||| | || || || | || || || || ||||| ||| || |||| Sbjct 12129 AACTTCTTAGCTCCCTCAGACTCGTACGGCATA-CGAAGCATCATAAA-ACAGTCTGCGA 12072 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||||| || | || | || | |||| | ||| || ||| | ||| Sbjct 12071 GCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGATTTT---TTACACTCTT 12015 Query 106347 CGGGATAAAAATTTC---TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 | || || ||| || |||||| | | || | ||| | |||| | ||| || | Sbjct 12014 TGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAA 11955 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| | | || ||| ||||||| || | | || || || | ||||||||| Sbjct 11954 CTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGC 11895 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| ||| || || || || ||| | ||||| |||| ||||||| Sbjct 11894 CAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTG 11835 Query 106524 TACACAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TTTGTT 106578 | || ||| ||| ||| ||| || |||||||| || |||||||| || | || Sbjct 11834 TGCATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 11779 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| ||||| || || || | || ||||||||||| | || | || | ||| Sbjct 11778 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 11720 Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||| | || ||| | | | | || | || || | ||| |||| | Sbjct 11719 GAACCAAAGTTTCTGCGCTTTCATCGTTTTCCTT-CCACGGCCTTGTTTCTCATACTCTT 11661 Query 106698 TGTAGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 106754 || | ||||| ||| || || ||| | || | | | ||| || |||| Sbjct 11660 CATATA--GCTTCTTAAAATCATCGCCCCAAACATC-TTGCAATCCCCTGCATTCATCTG 11604 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | |||| ||| | | ||| |||||| | | |||||| || || |||| || Sbjct 11603 GGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCC 11544 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 | |||| | ||||||||| | ||| | |||||| | || || || | | | Sbjct 11543 AAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTT 11484 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934 ||| ||||| | | ||| ||||||| ||||| | ||| | ||| || | || || | Sbjct 11483 CAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTAC 11424 Query 106935 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 106991 | | ||| |||||| | ||| | || ||| | ||| | ||||| ||||| |||| Sbjct 11423 GCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAA 11364 Query 106992 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 107051 | | |||| ||| |||||||| || |||||| || | | |||| | || | Sbjct 11363 TTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTAC 11304 Query 107052 GGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGT 107109 | || ||||| ||| || || ||| | | |||||| || | || || || Sbjct 11303 TCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCG--CATTTAGTTAGTGT 11246 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 || |||||||||| ||||| || || | || | || ||| ||||| || Sbjct 11245 GTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTG 11186 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 |||| ||| || || | ||| ||||| || |||||||| ||| Sbjct 11185 AGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 11143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972864758240