Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq231 134 7e-27 >seq231 Length=56951 Score = 134 bits (148), Expect = 7e-27 Identities = 318/477 (67%), Gaps = 4/477 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 || ||| || | || | |||||| || | ||||||| | ||||| || | ||| || Sbjct 11608 ATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGG 11549 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||| ||| | ||| | |||||| ||||| |||||||||||||| | Sbjct 11548 AACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCT 11489 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || | || || | || ||| |||||| || || ||||| || |||| ||| Sbjct 11488 GATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACC 11429 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | || |||||||||||||| | || || ||||| ||||| |||| || ||| Sbjct 11428 TTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCAT 11369 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| ||||||| | || || ||||| | |||| | || || || |||||| Sbjct 11368 CGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAAT 11309 Query 26188 ATCGTGAGCA-TG-AATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 || | || || | || | ||||| || || ||| ||| || | | Sbjct 11308 AT--TACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGTT 11251 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||| || || || || ||||| ||| || || | | |||||||||||| || Sbjct 11250 AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGAC 11191 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | ||| | | | || ||||||||||| | ||| ||||| ||||||||| ||||| Sbjct 11190 ATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATAT 11134 Score = 95.1 bits (104), Expect = 6e-15 Identities = 305/465 (66%), Gaps = 20/465 (4%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 || || | |||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 12774 GTCCTTAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 12715 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || ||||||| ||| || ||| | | | ||||| ||||| | ||| |||||| Sbjct 12714 GATAACTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACA 12655 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTT 24874 | | ||||||||||| | ||||| | || || | || || | | || Sbjct 12654 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTC 12595 Query 24875 TTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGAT-CCATTTTC 24933 || || ||| ||| || ||||| | |||||||||| || | ||||| | Sbjct 12594 TTATAAAGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAA-TGCTGCCATTATT 12536 Query 24934 TCTCAATAG-ATTC-----AATCTCAT-ATTCGGTGTCCAAAGATTAATTTTTTCAAGAT 24986 | ||||| |||| || | || || | | || ||| | | | | || Sbjct 12535 TG-CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGT------AAAT 12483 Query 24987 CTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATA 25046 | | | ||| || ||||| | || || || ||||| | ||||| | ||||| Sbjct 12482 CATTTAGCAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGA--TGATA 12425 Query 25047 A--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGC 25104 | ||| || || ||||| ||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 12424 AATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGC 12365 Query 25105 TGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 |||||||||| | ||||||||| ||||| | | ||||| ||| Sbjct 12364 TGTTGGCATTGGAGATATTAATAGAGAATTACGAATACCATGTTT 12320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036681696700