Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq245 114 2e-20 >seq245 Length=10549 Score = 114 bits (126), Expect = 2e-20 Identities = 269/401 (67%), Gaps = 24/401 (6%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA- 166009 |||| ||||| |||||| ||| |||||||| ||||| | | |||| | ||||| ||| Sbjct 2943 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 3002 Query 166010 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 3003 CATCATTGCAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 3059 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 || || | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 3060 TAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 3119 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAG 166184 |||||| || | ||||| | ||| || | | |||| | |||||| || || Sbjct 3120 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 3176 Query 166185 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTC 166232 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 3177 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 3236 Query 166233 ATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 166292 ||| ||||| |||| ||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 3237 ATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 3296 Query 166293 GGTCATGTTTTATACCTCAATATAATCCTTTAGAATTAATT 166333 || ||| | ||| | |||||||| ||| ||||| Sbjct 3297 GGAGTAGTTCAGTTCCTAACTATAATCCAAAAGATATAATT 3337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632481093014880