Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq145 545 2e-149 seq533 257 1e-62 seq662 147 2e-29 seq132 109 4e-18 seq424 105 5e-17 seq245 105 5e-17 >seq145 Length=38051 Score = 545 bits (604), Expect = 2e-149 Identities = 1077/1573 (68%), Gaps = 38/1573 (2%) Strand=Plus/Plus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 281388 ||| || ||| ||| | ||||| | || | || ||||| || || |||||||| Sbjct 13211 AGCATCATTAACCATACGTTCAATATCGTCCTTTGATAATCTACCCTTATCGTTAGTAAT 13270 Query 281389 AGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATT 281448 ||| || || || || || |||||| | |||| |||||| | |||||||| Sbjct 13271 AGTGATCTTGCTGCTCTTACCAGTACTCTTATCAACAGCAGACACATTCAAGATACCATT 13330 Query 281449 GGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCC 281508 ||||| | |||||| |||||||||||||| || || ||||| | || ||||| || || Sbjct 13331 AGCATCAATATCAAAGGTGACTTCAATTTGTGGTACACCTCTTGGTGCTGGTGGAATACC 13390 Query 281509 TTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAA 281568 || | || || |||| || || ||||| ||||| | || |||||||| | Sbjct 13391 ATCAAGATGGAACTTTCCGAGGAGATGGTTATCCTTAGTCATGGCTCTCTCACCCTCATA 13450 Query 281569 AATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC-TGGATTTTT 281627 || |||||| || || | || ||||| | |||||| || || ||| || || || Sbjct 13451 AACTTGGATCAAGACACCACTCTGGTTATCAGCATAAGTAGTGAAGACTTGTGTCTTCTT 13510 Query 281628 TACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTA 281687 | | ||| | ||||| || | ||||||| |||||||||| ||||||||| ||||||| Sbjct 13511 TGCTGGGA-TAGTTGTATTACGTTCAATAAGCTTGGTCATAACACCACCAGCAGTTTCTA 13569 Query 281688 AACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTT 281747 |||| || || | |||| ||||| | || | | || || | || | || Sbjct 13570 AACCGAGTGATAATGGAGCAACATCCAATAATAAGAGATCCTGTACGG---CAGAGGATT 13626 Query 281748 GACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGAT 281804 | || || | ||||| ||||| | |||||||||||| ||||||||||| || |||| Sbjct 13627 GCTCACCATTTAAGATAGCAGCTTGTACAGCAGCACCATAAGCAACAGCTTCGTCTGGAT 13686 Query 281805 TAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT--TGAAAGAAGTTGTCTTA-CCT 281861 | | | || | | | |||||| || ||| |||| |||| ||| | || | ||| Sbjct 13687 TGATTGCTTTGCATGGCTCTTTACCGTT-AAAGAATTCCTGAATCAAG--GCCTGAACCT 13743 Query 281862 TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTT 281921 | |||||||| | || || ||||| ||||||| ||||| || | || |||| Sbjct 13744 TTGGAATACGTGTAGAACCACCAACCAATACAACATCATGTACAGATCTCTTGTCCATAC 13803 Query 281922 TTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAA 281981 | |||| | ||||| ||||| || | | | || | || | || | || | Sbjct 13804 CAGCATCCTTGAGTACTTTCTCAACTGGAGCTAAAGTTGCACGGAAGTAATCAGCGCAGA 13863 Query 281982 GTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAAT 282041 ||||||||||| |||||||| | | | || ||||||||| ||||| | | |||| Sbjct 13864 GTTCTTCGAATCTAGCTCTACTGATGGCAACTGAATAATCAATACCTTCATAGAGTGAAT 13923 Query 282042 CAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTG 282101 | | ||||| |||| |||||| ||||| || | | | || ||||| || ||| | Sbjct 13924 CTAACTCAATTGTAGCTTGAGTAGAAGATGACAAAGTTCTCTTTGCACGCTCGCATTGAG 13983 Query 282102 TCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGATTCAAATCTGT---TTTATATTTTCTC 282157 | || ||||||| ||| ||| | || | || || ||||| | | ||| |||||| Sbjct 13984 TTCTGAGTCTTCTTAAAGCTCTAGCATTTGTGGTT-AAATCCATACCTCTATTCTTTCTC 14042 Query 282158 TTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTA 282217 |||||||||| ||||| || ||| || | ||||||||||||||||| ||||| | | Sbjct 14043 TTGAAATCTTGTACACAGAATTCTACGAGTCTGTTATCAAAATCTTCACCACCCAAGTGA 14102 Query 282218 GTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACA 282277 |||| || | |||||| | |||| |||| |||||||||| || || | | ||| Sbjct 14103 GTATCACCAGCGGTAGCTTTAACTTCAAAAATACCATCTTCAATAGTTAATAATGATACA 14162 Query 282278 TCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC--TTGGTTT- 282334 ||| || |||||||| | ||| || || | |||||| | || | | || ||| Sbjct 14163 TCAAAAGTACCACCACCTAAATCGAAGATCAATACATTTCTCTC---GCCAGTTCCTTTC 14219 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 |||||||||||||| |||| |||||| |||||||| || ||||| ||||||| ||||| Sbjct 14220 TTATCAAGACCATAAGCAATAGCAGCTGCAGTTGGCTCGTTAATGATTCTCATTACATTC 14279 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||||||| |||||||| || || ||||| | ||||| || || ||||| || Sbjct 14280 AAACCAGCAATTGCACCTGCATCCTTTGTTGCTTGACGCTGTGAGTCATTGAAATAAGCT 14339 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG--CGCTT--GCTGTTTG 282510 |||||||||| || || ||| | ||| | | ||| |||| | | | Sbjct 14340 GGAACAGTAACTACAGC----GTTCTTAATTTGGCGACCCAAGTATGCTTCAGAGATCTC 14395 Query 282511 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATT 282570 ||||| || ||||| ||| | ||||||| ||| | | ||| ||| |||| Sbjct 14396 CTTCATCTTTTGTAAAACCATAGCAGAAATTTCTTCAGCATGGAATTCCTTCTTTTCACC 14455 Query 282571 TTGATATGATAC-TTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626 | || ||| | | || ||| || || | | ||| ||||||||||||| Sbjct 14456 TAAGTAGTTTACACTGATGAT-TGGCTTGTCCTTTGGACCTCTAACTACTTTAAATGGCC 14514 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | ||||||| ||| || || |||| ||| | ||||||||| | ||||| | Sbjct 14515 AGTGAGTCATATCACTTTGTACTGCCTGATCATCAAACTTTCTACCAATAAGACGTTTAG 14574 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 ||||||||| ||||| ||| || ||| |||| | || |||||||| ||||| | Sbjct 14575 CATCAAAAACTGTATTTTCTGGGTTTCTAGCAACTTGGTTCTTTGCTGCATCACCAATAA 14634 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 || | || || |||||||||| ||||||||||| ||||| || ||||||||||| || | Sbjct 14635 GACGCTCAGTTTCTGTAAATGCTACATATGATGGTGTTGTACGGTTACCTTGATCGTTTG 14694 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 || ||| || || || | ||| ||||||||| ||||| | || || ||||||| Sbjct 14695 GAACAATATCTACAGTATCGTTTCTCCATACACCAACACATGAGTATGTGGTACCTAAAT 14754 Query 282867 CAATACCAATAGC 282879 ||||||||||||| Sbjct 14755 CAATACCAATAGC 14767 Score = 96.9 bits (106), Expect = 3e-14 Identities = 203/300 (68%), Gaps = 17/300 (6%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCA-ATGTTCTAAATACTCC 86018 ||||||||||| || ||||| || |||| |||| | || | ||| ||| | || Sbjct 14079 TCAAAATCTTCACCACCCAAGTGAGTATCACCAGCGGTAGCTTTAACTTCAAAA-ATACC 14137 Query 86019 ATTTGAGATATTCATTAACGAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTAC 86078 || | ||| | | ||| || ||||| || || ||| | ||||| || | | | ||| Sbjct 14138 ATCTTCAATAGTTAATAATGATACATCAAAAGTACCACCACCTAAATCGAAGATCAATAC 14197 Query 86079 GTTAC---CACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGC 86135 || | | |||||| ||| || ||| | ||| || |||| ||| || Sbjct 14198 ATTTCTCTCGCCAGTTCCTTTCTTA------TCA------AGACCATAAGCAATAGCAGC 14245 Query 86136 TGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAG 86195 ||||||||| || ||||| ||| | | |||| ||||| |||||| | | | ||| Sbjct 14246 TGCAGTTGGCTCGTTAATGATTCTCATTACATTCAAACCAGCAATTGCACCTGCATCCTT 14305 Query 86196 AGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAAT 86255 |||||||| | ||||| |||||| ||||| ||||| ||||||| || || || ||||| Sbjct 14306 TGTTGCTTGACGCTGTGAGTCATTGAAATAAGCTGGAACAGTAACTACAGCGTTCTTAAT 14365 >seq533 Length=19963 Score = 257 bits (284), Expect = 1e-62 Identities = 1025/1587 (65%), Gaps = 45/1587 (3%) Strand=Plus/Minus Query 281306 TTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAG 281365 || ||| |||| |||||| | ||| || ||||||| | ||| || | || | ||| Sbjct 13412 TTGTCTTCTTCGGCAAATTGCTCAGCCTCCTTAATCATACGCTCTATGTCTTCCTGTGAG 13353 Query 281366 AATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCG 281425 | ||| || || ||| || |||||||| |||| |||||| || ||||| Sbjct 13352 AGTCTACCCTTATCATTTGTGATAGTAATCTTCTCGGATTTACCAGTACCCTTATCCTTT 13293 Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || | | |||||||| | ||| | ||||| || || |||||||| || || Sbjct 13292 GCACTAACTTGTAAAATACCATCAGTATCAATTTCAAAAGTAACCTCAATTTGGGGAACA 13233 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||| |||||||| || | | ||| |||| || ||| ||||| ||| Sbjct 13232 CCTCTTGGAGCTGGTGGGATTCCAGAAAGCTCGAATTTTCCAAGGAGATTGTTATCCTTA 13173 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT---TGATTATCTGAA 281602 || | | || |||||||| ||| |||||| | ||||| | ||||||||| Sbjct 13172 GTCATTGGACGCTCACCCTCATAAACCTGGATA---AGTACAGCTGGCTGATTATCTTGG 13116 Query 281603 TAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 ||||| | || ||| ||| | || || |||| ||||||||| |||| | || Sbjct 13115 TAAGTACTGAAAACT-TGGCTCTTCTTGGTTGGAACAACAGTGTTTCTACCAATGAGCTT 13057 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 ||||||| |||||| | || || | ||| | || | |||||| ||||| | || Sbjct 13056 TGTCATAACTCCACCAACAGTCTCAATACCTAAAGTTAAAGGAGTAACATCCAATA---- 13001 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 ||| | || | | | | || ||| | | ||| | ||||| | |||||||| Sbjct 13000 -ATAAT---AAATCACT-ACCGCCTTCACCTGCTAAGATACCAGCTTGTACGGCAGCACC 12946 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 281840 ||| || || |||||||| || |||| | ||| | | || |||| || || | Sbjct 12945 ATAAGCGACGGCTTCATCTGGGTTAATTCCTCTGTTTGGCTCCTTTCCATCAAAGAACTC 12886 Query 281841 -TTGAAAGAAG-TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 |||| | | ||| | |||||| ||||||| || || ||||| || || || || Sbjct 12885 CTTGATCAAGGCTTGAAT---CTTAGGGATACGAGTAGAACCACCAACCAAAACGATCTC 12829 Query 281899 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || || | || || | | | | |||| ||||| || | ||| || || | | Sbjct 12828 ATCTACTTCAGACTTTTTGATTCCAGCATCCTCCAAAACCTTCTTAACTGGCTCGATAGT 12769 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 ||| |||||||| | | | || |||||||||||||| || | || | | | Sbjct 12768 CTTTCTGAACAAGTCAGCATTCAACTCATCGAATTTAGCTCTGGTCAAGGTTTCGCTCAA 12709 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||| | | || | |||| |||| || | | || ||| | | ||||| || || Sbjct 12708 ATCTACATCCTCCATCAAACCTTCAATCTCGACCTTAACTTGTGGAGCTGAAGAAAGAGC 12649 Query 282079 ACGTTTAGCACGT-TC-ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA-TT 282135 | || | || | || || | || |||| || |||| |||| | | || || || Sbjct 12648 TCTCTTTG-ACTTCTCGACCT-CTCTCCTAAG-CTTCTGAAGGGCTCTCTTGTCAGACTT 12592 Query 282136 CAAATCTGTTTTATAT-TTTCTCTTGAA-ATCTTCAACACACCATGTTACAAGACGATT- 282192 | ||| ||| | | ||| ||||| ||||| | | || | || || | Sbjct 12591 TACATCC-TTTCCTGTCTTTGACTTGATGATCTTGATAAAG---TGGTCCATAACTCTCT 12536 Query 282193 -ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||| ||||| ||||||||||| | |||| || ||||| || | ||||| | Sbjct 12535 GATCGAAATCCTCACCTCCCAAATGGGTATCACCACTTGTAGCAACGACCTCGAAAACAC 12476 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 | | |||| | ||| |||| ||||||| || |||||||||| ||| | | | | Sbjct 12475 CGTTATCAATGGTCAAGAGAGAAACATCAAAAGTACCACCACCCAAATCGTATACTA--A 12418 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 || | |||| | ||| || || | |||| | |||| || || || ||||| | Sbjct 12417 AATGCTCTTCTCAGCCTTC----TTGTCCAAACCAAAAGCAATTGCTGCTGCTGTTGGCT 12362 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||||||||| | | ||||| | ||| ||||| || ||||| || || || || | Sbjct 12361 CATTAATAATACGAATTACATTCAAACCGGCAATAGCACCAGCATCCTTGGTAGCCTGAC 12302 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || | ||| ||||| || || || ||||||||||| |||| ||||||| || || | Sbjct 12301 GCTGAGCATCATTAAAGTAAGCTGGGACAGTAATAACTGCATGCTTTACTTCCTTACCGA 12242 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 |||||| || ||| ||||| || || | ||| | ||||| | |||||| | Sbjct 12241 GATAAGCCTCAGCAATTTCCTTCATCTTGACCAAGACCATAGCTGAAACCTCTTCTGGGG 12182 Query 282552 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 ||||||| ||| | | || |||| | || || || || | |||| Sbjct 12181 CTAATTGCTTCTTCTCACCCTTAACAGAAACTTGTATGTAAGGCTTGCTATCTTTGTTAA 12122 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 ||| | | |||| | || |||| ||| || | || ||||| | || Sbjct 12121 TAATCTCATATGGTAGCAAAGTCTTATCCTTTTGGACGGAATCATCCTTAAAGCGACGAC 12062 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 |||| | || ||| |||| || | ||| | |||||| | | |||||||| |||| Sbjct 12061 CAATAAGTCTCTTTACATCGAACAAAGTCTGAACTGGATTGATAGTAGCTTGATTCTTGG 12002 Query 282732 CTGCATCTCCAATCAGATGTTCTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 ||| || ||||||| || | || || || ||||| ||||||||||| || | ||| Sbjct 12001 CTGATTCACCAATCA-ATCTCTCATCATCAGTGAATGATACATATGATGGTGTAATACGA 11943 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 |||||||| ||||| | |||||| || ||| ||||||| | | | ||| ||||| | Sbjct 11942 TTACCTTGTTCATTTGGAATAATCTCTACTCTACCATTCTTGTAGATACCAACACATGAA 11883 Query 282851 AAAGTTGTTCCTAAATCAATACCAATA 282877 |||| || |||||||| ||||||||| Sbjct 11882 TAAGTAGTACCTAAATCGATACCAATA 11856 >seq662 Length=1762 Score = 147 bits (162), Expect = 2e-29 Identities = 336/493 (68%), Gaps = 27/493 (5%) Strand=Plus/Plus Query 281322 ATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTAT 281381 |||||| ||||||||| |||||| ||||||||| | | || | | ||| || || Sbjct 637 ATTCTTCAGCTTCTCTGATCATTTTCTCAATTTCAGCACCACTTAGACCTCCA-GAAGAT 695 Query 281382 TAGTAATAGTAATATTCTTGGATTTGTTT---GTTGATTTATCAGCGGCAGTCACATTAA 281438 | |||||| || | | || ||| ||| ||||| |||||| ||| ||||| | Sbjct 696 TG--AATAGTGATCT-CGTG--TTTCTTTCCAGTTGACTTATCAATTGCACCAACATTCA 750 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498 ||| ||||| ||||| | |||||| ||||||||||||||||| |||||||| | || | Sbjct 751 TAATTCCATTTGCATCAATATCAAAGGTGACTTCAATTTGAGGTACCCCTCTGGGTGCTG 810 Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 | || || || || | |||| ||| || |||||||| || |||| || || Sbjct 811 GAGGAATTCCCATCATTTCAAATTGTCCAAGCAACTTATTATCAGCAGCAAATTCTCTTT 870 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | || | ||||| || || |||| ||||||||| |||| | ||| | |||||| Sbjct 871 CTCCTTGGAAAACTTTAATTCCAACTTGAGTTTGATTGTCTGCAGCAGTGGAGAATACT- 929 Query 281619 TGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG-GTCATAATACCACC 281676 ||| | |||||| ||| ||||| || ||||| | ||| | || | || | || ||||| Sbjct 930 TGGCTCTTTTTAGTAGGTATTGTGGTATTTCTGTTAATTA-ATCGAGTAAAAACTCCACC 988 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-TTTGAAGTT 281735 ||||| | ||| | ||| | || || || || | || | || || |||| Sbjct 989 CAAAGTTTCAATACCTAAAGATAAGGGTGTAACGTCGAGTAACAAAAGATCCTTGA---- 1044 Query 281736 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 || | ||| ||| || | | ||||| |||||||| || ||||||||||| Sbjct 1045 --TCTCCCCTTT---CAA----AACACCAGCTTGTATAGCAGCTCCCATTGCAACAGCTT 1095 Query 281796 CATCAGGATTAAC 281808 | ||||| ||||| Sbjct 1096 CGTCAGGGTTAAC 1108 >seq132 Length=18305 Score = 109 bits (120), Expect = 4e-18 Identities = 295/441 (67%), Gaps = 14/441 (3%) Strand=Plus/Plus Query 161051 TCGAATGGATTATCAACATTGAAT-TTTTTGCGATAACCAAGATCTACAAGTAATCTGTC 161109 || || |||||| ||| ||| | |||||| ||| ||||| | | ||||||||| || Sbjct 13010 TCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGG-CAAAAAGTAATCTATC 13068 Query 161110 AGCAACATATTTAATATATTGAGACATTAGTTCAGAATTCATACCAAGAAGTTTACACGG 161169 ||||||| ||| ||||||||| | ||| ||| ||||||||||||| ||| | | || Sbjct 13069 AGCAACAAATTCAATATATTGGGCCATAAGTCTCGAATTCATACCAATAAGATCAACAGG 13128 Query 161170 AAGAGAATCATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAAC 161229 |||||| ||| || ||| | | ||||| ||||| ||||| || ||||| | || Sbjct 13129 AAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC 13188 Query 161230 AACAGATTCTTTCAAACGATTATTCAACAATGAATACATAATACAAGCAAGTTCTACATG 161289 || || || | || | | ||| || | |||||||| || |||| Sbjct 13189 TCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATG 13248 Query 161290 TTTGTTTTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCAT 161349 |||||||||| ||||| || ||| || | | || ||||||| || | || Sbjct 13249 GAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA-TAAGTCCAC 13307 Query 161350 TTCTCTAGTTTTTAA-CCAGAAAATCGAAGCAAATGAT-CCACTAAAGAAAACGCCTTCT 161407 | ||||||| ||| ||||| | | |||| | | ||| ||| | || ||||| Sbjct 13308 GT------TTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCA 13360 Query 161408 ACAATAGAGAATGCTACTAATT-TGTGAGCATATGTCTTATCAGATTTAATCCATTTATT 161466 ||| | ||||| | | ||||| | | |||| | | ||||| || ||||||||| | Sbjct 13361 ACAGCACAGAAT-CCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTCATCCATTTAGT 13419 Query 161467 ACACCAATCAGCTTTCTTTTT 161487 ||| || ||||||||||| Sbjct 13420 TGCCCATTCTGCTTTCTTTTT 13440 >seq424 Length=41796 Score = 105 bits (116), Expect = 5e-17 Identities = 134/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 637117 AAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTA 637176 ||| | ||||| |||| || || ||||| ||||| |||||||||||| ||||||| ||| Sbjct 5734 AAAGTAATTGTAGATTTCTCATCACCAAACATTGCCAAAGAAATGCATGTTGGACACTTA 5675 Query 637177 AGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTT 637236 ||||| || ||||||||||| | | ||||| | | ||| | ||| || || Sbjct 5674 AGATCTACAATTATTGGTGATACAACATGTAGAATTCTTGAATATTTAGGATTTGAAGTA 5615 Query 637237 TATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATT 637296 | | ||||||| || || |||||||| |||||||| || ||| | |||| ||| || Sbjct 5614 TTAAGAGTTAATCACGTTGGAGATTGGGGTACTCAATTTGGCATGCTTATTGAATAT-TT 5556 Query 637297 AAA 637299 ||| Sbjct 5555 AAA 5553 >seq245 Length=10549 Score = 105 bits (116), Expect = 5e-17 Identities = 331/503 (66%), Gaps = 15/503 (3%) Strand=Plus/Plus Query 401131 TATTATGATTTCATTCACAAAGAACTTATTACTTTTTCTGTGGATGACGTTCT--TAGAT 401188 |||| |||||| ||||| ||||||||| | || || || ||| | || ||||| Sbjct 2801 TATTTTGATTTTATTCATAAAGAACTTGTA--TTATTTAGTAGATATGATACTACTAGAT 2858 Query 401189 CTGTTCCTAATTTAATGGATGGATTTAAACCATCACATCGCAAAGTATTTTATGGTTCTG 401248 || |||| |||||| | ||||| || ||||| ||| | |||||| ||| || | Sbjct 2859 CTATTCCAAATTTATTAGATGGTTTAAAACCTGGACAAAGAAAAGTACTTTTTGCAACAT 2918 Query 401249 TTGAAAAGAATATTTATAAGCAAGAGATTAAAGTATCAGATTTGACTGGTTTTGTCTC-G 401307 || |||| || || |||| || ||||||| || | || |||||| ||| | | Sbjct 2919 TTAAAAAAAAGCTTAATAATGAAC---TTAAAGTTGCACAATTAGCTGGTTATGTTGCTG 2975 Query 401308 AATATGACGAAATATCATCATGGTGATCAATCATTATCATCAACTATTGTCGGAATGGCT 401367 || || | ||||||||||| || |||||| | |||||||| |||||| Sbjct 2976 AACATAGTGCT-TATCATCATGGAGAATCATCATTGCAAAGTACTATTGTTAATATGGCT 3034 Query 401368 CAAAATTATGTGGGAAGTAACAATCTCAATTTGTTAATGCCATTGGGAATGTTTGGATCT 401427 ||||||| ||| |||||||| ||||| ||| | ||| |||| || ||||| | Sbjct 3035 CAAAATTTTGTTGGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGT 3094 Query 401428 AGATTGACCGGAGGTAAAGATTCAGCGAGTCCTAGGTATTTGAACACTAAATTAGATGAT 401487 ||| || || |||||| || | || | ||| | ||||| || | | Sbjct 3095 AGAAAAGAAGGTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTACTAAGCTATCTAAA 3154 Query 401488 TTGGCAAAGAAAATCTTCATTGATTATGATTTTGATATTCTTCAACATCAGTCAGAAGAT 401547 | | | | | || ||| || |||| | | || || ||| | | | | | ||| Sbjct 3155 TGGACTAGATATATTTTCCCAGAGGCTGATGATCCT-TTATT-AAC-TTATTTATATGAT 3211 Query 401548 AATTG---TCGAATTGAACCTGTTTATTATGCTCCTATTATTCCAATGATACTTGTAAAT 401604 || | | |||||||||| | ||||| | ||| || ||||||||||| | |||||| Sbjct 3212 GATGGACAACAAATTGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAAT 3271 Query 401605 GGAGCTGAAGGAATTGGTACTGG 401627 || |||| ||||||||||| || Sbjct 3272 GGTACTGATGGAATTGGTACAGG 3294 Score = 98.7 bits (108), Expect = 7e-15 Identities = 223/340 (66%), Gaps = 33/340 (10%) Strand=Plus/Plus Query 399172 ATTACTTATGTACCTGGTCTATATAAAATTTATGATGAAGTAATTGTAAATGCGGCAGAT 399231 |||| ||||||||||||| ||||||| |||| ||||||| | | || ||||| || ||| Sbjct 602 ATTAATTATGTACCTGGTTTATATAAGATTTTTGATGAAATCTTAGTTAATGCTGCTGAT 661 Query 399232 CATAA--CAAGAGA-------------------------TGTCAAACATGTAATATTATC 399264 ||| | ||||| | | ||| ||||| | ||| Sbjct 662 GTTAAAGCTAGAGAAATTTCAACTAAAAATAATCATATTTTTGAAAAATGTACTTGTATT 721 Query 399265 AAAGTTGATATCGATC---AAAAAACAGGTCAAATTTCTGTTTGGAATAATGGTGATGGT 399321 |||||||| || || |||||| || ||||| |||| | ||| |||| || || Sbjct 722 AAAGTTGAAATTAATAGAGAAAAAAAAG---AAATTACTGTATTTAATGATGGAGAAGGA 778 Query 399322 ATTGATGTAGCAATTCATAAAGAACATAATATATGGGTACCATCAATGATTTTTGGAGAA 399381 || | | ||| |||| ||||||| | ||| || ||| | | ||||||||| | Sbjct 779 ATACCAATTGAAATACATAGAGAACATCAAGTATATGTTCCAGAATTAATTTTTGGACAT 838 Query 399382 CTTTTAACGTCTACTAATTACGATAAAAACGAGGAAAAAACTGTTGGTGGTAAAAATGGT 399441 | ||||| ||| |||||| ||| | || || || | | | ||| || | ||||||| Sbjct 839 TTATTAACTTCTGATAATTATGATGATAATGAAGATAGAGTTACTGGAGGAAGAAATGGT 898 Query 399442 TTTGGCGCTAAGCTTGCTAATATTTATTCTGTTGAATTTA 399481 ||||| || || ||| ||||||| | ||| ||||||| Sbjct 899 TTTGGAGCAAAACTTACTAATATATTCTCTAAAGAATTTA 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740577572947176