Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq231 98.7 1e-15 seq132 82.4 8e-11 >seq231 Length=56951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 || ||| | || || | ||||| ||| ||| ||| || | |||||||| || | Sbjct 11649 TTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTC 11590 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || || | ||||||||||| | |||||||| || || || | ||| ||||| | ||| Sbjct 11589 CAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAG 11530 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 || ||||| || | |||||| || | || || ||| | | || | ||| || | Sbjct 11529 AGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACA 11470 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || ||||||||||||||| ||| || || | | ||| || ||||| || || || Sbjct 11469 ACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCT 11410 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 || | | |||| || |||| || |||| || ||||| || Sbjct 11409 TGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGG 11366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 || ||||| ||||| | || |||| || ||||| | | || || || || || || Sbjct 11366 CCGATGCTGCGCGTTTATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGT 11425 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || || | | || || || | ||||| ||||||| || || | || || | ||| Sbjct 11426 AAAGGTGCCATTGCAATTTATTTGGAGCCGTGGCACGTTGATGTTGTAGAGTTTATTGAA 11485 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGG 19603 | | ||| || || | || |||||| | |||||||| ||||| | ||| | ||| Sbjct 11486 ATCAGGAAGAATCACGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGG 11545 Query 19604 ATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCG 19663 |||| || || |||||||| | ||||||||||| |||| ||| || |||||||| Sbjct 11546 GTTCCTGATCTGTTCATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCA 11605 Query 19664 CACGAATGC 19672 | |||||| Sbjct 11606 GATGAATGC 11614 >seq132 Length=18305 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC-ATCATTTGC 59977 || || ||| | |||||||||||||| | | ||||||| | || |||| ||| ||||| Sbjct 13446 GCTGTAAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATTCT-GAGCGATCTTTTGC 13388 Query 59978 ACAACGTCTCA-TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | | | | | || || ||| || |||||||| | || ||||| || ||| Sbjct 13387 TGAAAGAATTATTGGATTCTG--TGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGT 13330 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || ||||| ||||| ||||| ||||| || ||||| || || | || || || || || Sbjct 13329 GCAATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTT 13270 Query 60096 ATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| || || || || |||||| || ||||| Sbjct 13269 ATTAGTCGTGATGAAGGTCTCCATGCTGATTTTGC 13235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517422341440