Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq132 206 2e-48 >seq132 Length=18305 Score = 206 bits (228), Expect = 2e-48 Identities = 575/860 (67%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 12942 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 13001 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 13002 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 13061 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTA-A 4435 ||| ||||| |||||||| ||||| ||| ||| ||| ||| | || || ||||| | | Sbjct 13062 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA-TTCATACCAATAAGA 13120 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 13121 TCA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 13179 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACG 4551 | || || | || || |||| ||||| |||| | | | | |||||| | Sbjct 13180 TTGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAG 13235 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| | Sbjct 13236 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 13295 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | |||||||||||||| || || ||| |||||||| | || | Sbjct 13296 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 13355 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| || || || | | | |||| | || || | ||| | || | ||| Sbjct 13356 CTTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGCTCAGAATTCA-TCC 13412 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAAT 4790 |||| |||||| | ||||| || || || ||| || | | || || | ||| Sbjct 13413 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAA-ATTGCTTCAAAG 13471 Query 4791 A--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | |||| || || || || | || |||||| | || || |||| ||| || Sbjct 13472 AGCATTTGACGTTCTTTAATT---TCAGTAATATATCTATCAATAAGTAATGAATAAGTT 13528 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||||||||| | || | Sbjct 13529 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 13588 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || ||||| ||||| || ||| Sbjct 13589 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 13648 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCCAG 5024 || || || ||||||| ||||| | | || ||||| | |||| ||| ||| Sbjct 13649 AAGAATGCTAAAACATATTTGATAAAATG-TCTT--TCAGGGTCTTTAAGACTTTCCCAA 13705 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | ||||| | ||| ||||| ||||||| | ||||||||||||||| |||||| Sbjct 13706 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 13765 Query 5085 TTGTACATAGACCAAATATC 5104 || ||||| ||||||||||| Sbjct 13766 TTATACATTGACCAAATATC 13785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427043999778308