Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093595.1_202017-04- 14] 1,076 sequences; 9,111,587 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq231 379 3e-100 seq132 206 4e-48 >seq231 Length=56951 Score = 379 bits (420), Expect = 3e-100 Identities = 1186/1814 (65%), Gaps = 28/1814 (2%) Strand=Plus/Minus Query 76817 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCA 76875 || ||| || || || ||||||||||| |||| || || |||||||| || | | Sbjct 12769 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 12710 Query 76876 GTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG 76935 |||| || | ||| || | |||||||| |||| || || |||| | | | Sbjct 12709 CTTTGCAA-AGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATG 12651 Query 76936 CTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGA 76995 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || Sbjct 12650 GACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTAT 12591 Query 76996 AAA-CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGAT 77051 ||| || | | ||||| || |||| | | ||||||||||| ||| || || Sbjct 12590 AAAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCA 12532 Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 ||||| | | ||| | ||||| ||| || |||| |||| | | || | | Sbjct 12531 ATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAA 12472 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| |||| || || ||||| | |||||||||| ||||| || |||| Sbjct 12471 TGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTA 12412 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 |||| || | | |||||||| || |||||||| | ||| || || |||||||| || Sbjct 12411 AATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGA 12352 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 | | |||| | ||| | | ||||||| | || ||||||| || | | |||| Sbjct 12351 GATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAA 12292 Query 77292 TCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 || ||||| | || ||| ||| |||| | ||| |||||| ||| || ||||| Sbjct 12291 TCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTC 12232 Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 ||| || || ||||||||| || || || | | |||| || || ||||| || || Sbjct 12231 GCAGGCGAACCGGAATATGTTTCGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCG 12172 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468 || | ||| | ||||| || ||| ||||| | ||||| | | | ||| | | Sbjct 12171 TCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCA 12112 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || |||| | | | | ||||| ||||| | || |||| ||||| || Sbjct 12111 GACTCGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 12052 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 | || | |||||| ||| || ||||| ||| | || |||||| || ||| Sbjct 12051 AATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCA 11992 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || | |||||| | ||| || || || || || || |||| ||| ||||||| Sbjct 11991 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 11932 Query 77649 AA--TCTTCC-ATCTATAACAAACA-TGTTCAAAG--CTATAGATGCTAGATTACAAACT 77702 || |||| || | || ||| | | || ||| | ||||| || |||||||| || Sbjct 11931 AACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACG 11872 Query 77703 GCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATA 77762 || || || | | | | | |||| ||| || || || |||| ||||| | ||| Sbjct 11871 GCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 11812 Query 77763 GTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGG 77821 || |||| ||||| ||||| || || |||| ||| | || |||||| |||||| || Sbjct 11811 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGG 11753 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 ||||| || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 11752 TGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCAT 11696 Query 77882 AGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| | Sbjct 11695 CGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGC 11637 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 |||||||||| | |||||| |||||||| ||||||||| | | ||| || ||| | Sbjct 11636 CCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCT 11577 Query 77998 CCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 78057 || ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || || Sbjct 11576 TCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATC 11517 Query 78058 TATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCC 78117 | ||||| ||||| |||||| | | || | |||||| | || |||| |||| Sbjct 11516 TCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCC 11457 Query 78118 ATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATC 78177 | || || | ||| ||||| || | || || || || || ||||| ||||| | Sbjct 11456 ACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACC 11397 Query 78178 TGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTC 78237 | || |||| ||||||||| | || ||| ||||| | || |||||| | |||||||||| Sbjct 11396 TAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTC 11337 Query 78238 CAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCA 78297 | |||||| ||| || | | ||||||||| | | | ||| | || || || Sbjct 11336 CTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAG 11277 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 ||||| || ||||| | | ||| || ||||||| | ||| || || Sbjct 11276 TCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 11217 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 || | || | |||||| ||||||||| | | ||| |||| |||||| | || Sbjct 11216 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTG 11157 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || | |||||| ||||| |||||| || | | | |||||||||| || | || Sbjct 11156 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 11097 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | || || | |||||| || | || ||||||| | ||| || |||||||| | Sbjct 11096 CAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCA 11037 Query 78538 CCGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | || || | ||||| || ||| || ||| |||| | |||||| || ||||||| Sbjct 11036 CAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 10978 Query 78597 TTGTATGAAAAGTC 78610 | |||| ||| || Sbjct 10977 TCGTATTCAAAATC 10964 >seq132 Length=18305 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 12914 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 12973 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 12974 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 13033 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 13034 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 13092 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | ||||||| || ||||| | ||| || |||| || |||||| | | Sbjct 13093 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 13152 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 13153 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 13207 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||||||| ||| ||||||||||| | |||| Sbjct 13208 AATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTA 13267 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 13268 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 13327 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 13328 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 13386 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||| | | || || || || |||||| || || ||||| |||| Sbjct 13387 AGCAAAA----GATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTA 13442 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || | || ||| | Sbjct 13443 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATAT 13502 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 13503 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 13560 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||| | || |||| || || || | | || || || Sbjct 13561 AGCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 13620 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| |||| ||| ||||||| | | Sbjct 13621 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 13680 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | |||||||| Sbjct 13681 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGT 13740 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||| || || || |||||||||||||| ||| ||||| Sbjct 13741 AACCCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 13785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659456704640