Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq277 147 5e-30 >seq277 Length=127130 Score = 147 bits (162), Expect = 5e-30 Identities = 312/451 (69%), Gaps = 21/451 (5%) Strand=Plus/Minus Query 230198 TGTG-TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| ||||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 120543 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 120487 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || ||| Sbjct 120486 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 120427 Query 230314 CTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 230369 |||||| | || | | | ||| ||| ||||| | || || ||||| | Sbjct 120426 CTCCATGCTGATTTTG-CTTGTTTAA-TATATAAAGCCCTTAAATTTAAATTACCAGCTC 120369 Query 230370 CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGA 230429 | ||| || |||||||||| ||||||| |||||| |||| | || ||||||| Sbjct 120368 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 120311 Query 230430 CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAAT 230488 | || |||| ||| | |||||||| ||||| | |||||||| || || || |||| Sbjct 120310 CTCTCTTCC-TGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAAT 120252 Query 230489 TCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA--CGAGAAAGTGTACAACTCTAAGAA 230546 | || || || | | || |||| ||||| || | | ||| | |||||| | || Sbjct 120251 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAA-TCTACAACGTTTCTAA 120194 Query 230547 CCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCG 230606 || |||| | ||||| || ||||| |||||||| || || ||||||||||||||| | Sbjct 120193 TCCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAG 120134 Query 230607 TGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || |||| ||||| | | |||| || ||| Sbjct 120133 AGTTGGTGAATATCAAATGGCTGGAGTTATG 120103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819812008670