Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq262 280 2e-70 seq277 250 3e-61 >seq262 Length=70338 Score = 280 bits (310), Expect = 2e-70 Identities = 1188/1857 (64%), Gaps = 42/1857 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 52865 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 40078 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 40020 Query 52866 GACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTA 52925 |||| |||| || |||||||||||| || || || | | | | | || | | | Sbjct 40019 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 39960 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 39959 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 39900 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 53044 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 39899 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 39841 Query 53045 A-GGT--TTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | |||| ||||| ||| || | | ||||| | | ||| | | |||| Sbjct 39840 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 39781 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 39780 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 39721 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 39720 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 39661 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 39660 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 39601 Query 53282 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 53336 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 39600 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 39543 Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 53396 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 39542 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 39483 Query 53397 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 39482 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 39423 Query 53457 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 53513 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 39422 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 39367 Query 53514 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 39366 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 39307 Query 53573 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 || || ||| | ||| | || |||||| || || || | |||||| | || Sbjct 39306 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 39247 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTAT 53688 || ||| || || || || || | || ||||||||| |||| || | | Sbjct 39246 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TAT-TTT 39189 Query 53689 TACAAAC--ATGTTCAATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || ||| || || | | ||||||| ||||||||||| ||||| || || | | Sbjct 39188 TATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGC 39129 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 39128 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 39069 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 39068 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 39009 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 | | | || || ||| | | || || || | || | | | Sbjct 39008 GAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCC 38951 Query 53925 CTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 | |||| ||| | | ||| | | ||| || || |||||||||| | |||||| Sbjct 38950 TTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCC 38891 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 54039 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 38890 CCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCAT 38834 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || |||||||||| |||||| || ||| | ||| | ||| || || ||||| Sbjct 38833 GAACAGATCAGGAACCCAAAGGGCAGGAAAGATATCGCGACATCTCATCTCTTCCTTTCC 38774 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 38773 GTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAAT 38714 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | || | || || || ||| || ||||| || || ||||| |||| |||||| Sbjct 38713 TGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATA 38654 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| | || ||| ||||| | ||||| ||| ||||| || || ||||| || Sbjct 38653 AACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACC 38594 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | | | | ||||||||| | || | || | || || || | ||| || ||| Sbjct 38593 AGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGC 38534 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 |||| ||| || ||| |||| || | ||| ||| || || | |||| ||| Sbjct 38533 GCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAA 38474 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| |||||||| | || ||| || | |||||| | || || | || || || Sbjct 38473 ACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGT 38414 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| |||||| || | | | || || || | || | || ||||| | ||| Sbjct 38413 AAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATG 38354 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||| || | ||| ||||| | | || || |||||||| || | ||||||| || Sbjct 38353 AATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAAT 38294 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 ||| || | |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 38293 TTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 38237 >seq277 Length=127130 Score = 250 bits (276), Expect = 3e-61 Identities = 591/875 (68%), Gaps = 31/875 (4%) Strand=Plus/Plus Query 23819 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 23875 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 120088 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 120147 Query 23876 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 ||||||||||||| | ||| ||| ||||| |||| | ||||| | ||| || || Sbjct 120148 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 120207 Query 23936 GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 |||| || || |||| || ||| |||||||| || ||||| || |||||| Sbjct 120208 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 120267 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 120268 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 120327 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 24111 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 120328 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 120381 Query 24112 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 24168 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 120382 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 120440 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 120441 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 120500 Query 24229 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTT 24287 | | | |||| | | |||||||| | ||||||||| || || || |||||| |||| Sbjct 120501 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 120559 Query 24288 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 120560 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 120618 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 24406 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 120619 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 120678 Query 24407 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 120679 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 120736 Query 24465 CCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATT 24523 | || | ||| |||||| || | || |||| |||| || || | ||||||| || Sbjct 120737 GCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 120795 Query 24524 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 24583 ||| | || || || ||||| || ||||| || || || |||| ||| ||||||| | | Sbjct 120796 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 120855 Query 24584 TTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641 ||| ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 120856 TTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCA 120913 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 |||||| || || || || ||||||||||| Sbjct 120914 GTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 120948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719306750320