Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq285 138 2e-27 seq247 109 8e-19 >seq285 Length=70399 Score = 138 bits (152), Expect = 2e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || |||| | Sbjct 187 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 246 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| ||||| || ||||||||||| Sbjct 247 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATCCCACCTGATCA 305 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 306 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 365 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||||| || ||||| || || || Sbjct 366 CATTCAAAAAGAGTCCACTTTACACTTAGT 395 Score = 125 bits (138), Expect = 1e-23 Identities = 132/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 19 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 77 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 78 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 137 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 138 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGGTAT 188 >seq247 Length=95557 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 43056 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 42997 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || ||||| || ||||||||| Sbjct 42996 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 42937 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 42936 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 42877 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 || || || || || ||||||||||| || ||| Sbjct 42876 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTA 42844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453082051200