Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq277 102 7e-17 seq247 96.9 3e-15 seq285 89.7 5e-13 >seq277 Length=127130 Score = 102 bits (112), Expect = 7e-17 Identities = 370/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || ||||| ||||||||| |||||| | || Sbjct 120961 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGA 120902 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || | | ||| || |||||||| || ||||| |||| ||| ||||||| || Sbjct 120901 TCTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAA 120842 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || || || || || || ||| ||||||||||||| || || || | | || Sbjct 120841 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAA- 120783 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | ||| | |||| || ||| | ||| | |||||| || | | Sbjct 120782 ATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTA 120723 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| |||| ||||| |||| || |||| || | | || || Sbjct 120722 TTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGA-AATT 120664 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || || || || | ||||| | Sbjct 120663 A--AAGAACGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAG 120606 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 |||| ||| ||| |||||||| || | || | | || || || || | || Sbjct 120605 CAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTTGCTGAAAGAATTATT 120550 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 | ||| || || ||||| || | ||||| || |||||| ||||| |||||| | Sbjct 120549 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT 120490 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 120489 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAA 120430 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||||| |||||||||| || |||| || Sbjct 120429 GGTCTCCATGCTGATTTTGCTTGTTTAATATA 120398 >seq247 Length=95557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 43059 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 43000 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| || | || || || Sbjct 42999 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGTATTCCTCCTGA 42941 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 42940 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 42881 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 42880 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGT 42829 >seq285 Length=70399 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || ||||| || || Sbjct 187 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 246 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | | | |||||||| | || || || || Sbjct 247 GATACAATTGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAAGGAATCCCACCTGATCA 305 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 306 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 365 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || ||| | || | || || ||||| || ||||| Sbjct 366 CATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGG 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764678227280