Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq262 304 2e-77 seq277 250 3e-61 >seq262 Length=70338 Score = 304 bits (336), Expect = 2e-77 Identities = 1195/1857 (64%), Gaps = 42/1857 (2%) Strand=Plus/Minus Query 64838 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 64896 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 40078 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 40020 Query 64897 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 40019 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 39960 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 39959 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 39900 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 65075 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 39899 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 39841 Query 65076 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | || | |||| |||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 39840 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 39781 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 39780 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 39721 Query 65193 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 65252 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 39720 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 39661 Query 65253 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 65312 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 39660 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 39601 Query 65313 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 65367 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 39600 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 39543 Query 65368 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 65427 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 39542 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 39483 Query 65428 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 39482 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 39423 Query 65488 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 65544 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 39422 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 39367 Query 65545 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 39366 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 39307 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 39306 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 39247 Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT--CTATTA 65721 || ||| || || || || || | || ||||||||| || | | ||| Sbjct 39246 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTA 39187 Query 65722 CAAAC--ATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 ||| || || | | ||| ||| ||||||||||| ||||| || || | | Sbjct 39186 TCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTA 39127 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 39126 GTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGG 39067 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 39066 TTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGA 39007 Query 65898 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 | | || || ||| | | || | || || || | || | | | Sbjct 39006 GCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCCT 38950 Query 65957 TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 | |||| ||| | | ||| | | || || || |||||||||| | |||||| Sbjct 38949 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 38890 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 66071 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 38889 CTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCATG 38833 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || |||||||||| |||||| || ||| | ||| | ||| || || ||||| Sbjct 38832 AACAGATCAGGAACCCAAAGGGCAGGAAAGATATCGCGACATCTCATCTCTTCCTTTCCG 38773 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 38772 TGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATT 38713 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || || | || || || ||| || ||||| || || ||||| |||| ||||||| Sbjct 38712 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 38653 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| Sbjct 38652 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 38593 Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 || | | ||||||||| | || | || | || || || | ||| || |||| Sbjct 38592 GTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCG 38533 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 ||| ||| || ||| |||| || | ||| ||| || || | |||| |||| Sbjct 38532 CATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAA 38473 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || |||||||| | || ||| || | |||||| | || || | || || ||| Sbjct 38472 CAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 38413 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 66551 || |||||| || | | | || || |||| || | || ||||| | |||| Sbjct 38412 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 38353 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || | ||| ||||| | | || || |||||||| || | ||||||| ||| Sbjct 38352 ATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 38293 Query 66612 TTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 || || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 38292 TT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 38237 >seq277 Length=127130 Score = 250 bits (276), Expect = 3e-61 Identities = 592/875 (68%), Gaps = 31/875 (4%) Strand=Plus/Plus Query 35842 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 35898 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 120088 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 120147 Query 35899 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA 35958 ||||||||||||| | ||| ||| ||||| |||| || ||||| ||| || || Sbjct 120148 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 120207 Query 35959 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 36018 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 120208 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 120267 Query 36019 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 36078 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 120268 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 120327 Query 36079 TTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG----AT 36134 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 120328 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 120381 Query 36135 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 36191 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 120382 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 120440 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 120441 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 120500 Query 36252 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 36310 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 120501 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 120559 Query 36311 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 36369 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 120560 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 120618 Query 36370 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 36429 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 120619 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 120678 Query 36430 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 120679 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 120736 Query 36488 CCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546 | || | ||| |||||| || | || |||| |||| || || | ||||||| || Sbjct 120737 GCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 120795 Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606 ||| | || || || ||||| || ||||| || || || |||| ||| ||||||| | | Sbjct 120796 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 120855 Query 36607 TTCGTTTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 ||| ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 120856 TTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCA 120913 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 |||||| || || || || ||||||||||| Sbjct 120914 GTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 120948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170257807560