Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq247 96.9 2e-15 seq285 84.2 1e-11 >seq247 Length=95557 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/239 (69%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||||||||| | | || || |||||||| || ||||| || || |||||||| |||| Sbjct 42828 CACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAG 42887 Query 33201 ACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | | ||||| || ||||||||||||||| ||| || | ||| || || || Sbjct 42888 ATA----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCA 42943 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || || || || || || ||| |||| |||| | | ||| || ||| Sbjct 42944 GGAGGAATACCCTCCTTATCCTGGATCTTTGCCT---TTACATTCTCAATAGTATCGGAA 43000 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| ||| |||| || || || ||||| || | |||||| || ||||||||||| || Sbjct 43001 GGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 43059 >seq285 Length=70399 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/234 (68%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | | || || || || || || ||||||||||| || ||||||||||| Sbjct 413 CCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 354 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 353 A----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 298 Query 33259 GGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || ||||| || || |||| ||| || || | | ||| || || || Sbjct 297 TGGGATTCCTTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAGG 241 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||| |||| ||| || || ||||| || | ||| || |||||||| ||||| Sbjct 240 CTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776399503482