Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq262 307 1e-78 seq277 223 4e-53 >seq262 Length=70338 Score = 307 bits (340), Expect = 1e-78 Identities = 1198/1858 (64%), Gaps = 44/1858 (2%) Strand=Plus/Minus Query 61994 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62052 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 40078 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 40020 Query 62053 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 40019 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 39960 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 39959 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 39900 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62231 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 39899 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 39841 Query 62232 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | || | |||| |||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 39840 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 39781 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 39780 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 39721 Query 62349 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62408 ||||| | |||||| ||| ||||| || |||| | || || | |||||| || Sbjct 39720 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 39661 Query 62409 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62468 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 39660 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 39601 Query 62469 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 62523 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 39600 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 39543 Query 62524 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62583 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 39542 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 39483 Query 62584 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 39482 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 39423 Query 62644 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 62700 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 39422 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 39367 Query 62701 AG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62759 || | ||||| ||| || | ||||||| ||||| || | || | |||||| | Sbjct 39366 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 39307 Query 62760 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 39306 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 39247 Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TT 62876 || ||| || || || || || | || ||||||||| || | || || Sbjct 39246 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 39188 Query 62877 ACAAAC--ATGTT-CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 | ||| || || |||| ||| ||| ||||||||||| ||||| || || | | Sbjct 39187 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 39128 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| || Sbjct 39127 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 39068 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 39067 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 39008 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63112 || | || || ||| | | || ||| | || | ||| || | | Sbjct 39007 AGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGCC 38951 Query 63113 -TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | |||| ||| | | ||| | | || || || |||||||||| | |||||| Sbjct 38950 TTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCC 38891 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 63226 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 38890 CCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCAT 38834 Query 63227 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || |||||||||| |||||| || ||| | ||| | ||| || || ||||| Sbjct 38833 GAACAGATCAGGAACCCAAAGGGCAGGAAAGATATCGCGACATCTCATCTCTTCCTTTCC 38774 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 38773 GTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAAT 38714 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || || | || || || ||| || ||||| || || ||||| |||| |||||| Sbjct 38713 TGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATA 38654 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||| | || ||| ||||| | || || ||| | ||||| || || ||||| || Sbjct 38653 AACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACC 38594 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | | | | ||||||||| | || | || | || || || | ||| || ||| Sbjct 38593 AGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGC 38534 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 |||| ||| |||||| ||||||| | ||| ||| || || | |||| ||| Sbjct 38533 GCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAA 38474 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 ||| |||||||| | || ||| || | |||||| | || || | || || || Sbjct 38473 ACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGT 38414 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| |||||| || | | | || || |||| || | || ||||| | ||| Sbjct 38413 AAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATG 38354 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||| || | ||| ||||| | | || || |||||||| || | ||||||| || Sbjct 38353 AATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAAT 38294 Query 63767 TTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 ||| || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 38293 TTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 38237 >seq277 Length=127130 Score = 223 bits (246), Expect = 4e-53 Identities = 589/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 32989 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 120089 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 120148 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 120149 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 120208 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||||| || |||| || ||| |||||||| || || ||||| |||||| | Sbjct 120209 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 120268 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | ||||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 120269 ATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 120328 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 120329 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 120379 Query 33286 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 33335 |||| | ||| | || ||||| || ||||| ||| || ||||| || || | Sbjct 120380 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACG 120438 Query 33336 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33395 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 120439 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 120498 Query 33396 TATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 || | | | || | | |||||||| | |||||||| || ||| || |||||| || Sbjct 120499 AATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 120557 Query 33455 TCTCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33513 | || || || |||| || ||||| || ||||| || || ||||||||| Sbjct 120558 TTTCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTT 120616 Query 33514 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33569 ||| || || | || || | |||||| | ||| ||| | || | Sbjct 120617 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGT 120672 Query 33570 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 120673 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 120730 Query 33628 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGC 33686 ||||| | || | ||| |||||| || | || |||| |||| || || | | || Sbjct 120731 TGAAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGC 120789 Query 33687 CAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| | || || || ||||| || ||||| || || || |||| ||| ||||| Sbjct 120790 TAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 120849 Query 33747 ATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 33804 || | |||| ||| || || | | |||||| | |||||| | || ||| | | Sbjct 120850 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATT 120907 Query 33805 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| |||||| || || || || ||||||||||| Sbjct 120908 TCTTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 120948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944793866440