Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq277 266 8e-66 seq281 89.7 1e-12 >seq277 Length=127130 Score = 266 bits (294), Expect = 8e-66 Identities = 592/864 (69%), Gaps = 37/864 (4%) Strand=Plus/Minus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATT--TCCACTGATA 22162 || || ||||| ||||| || | |||| | | ||||||||| | || | |||| Sbjct 120945 TATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAA--GATA 120888 Query 22163 AGACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCAT 22222 | |||||| || |||| ||| ||| |||||||||||||||| || |||||| Sbjct 120887 CTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAAATATGTTTTAGCAT 120828 Query 22223 TCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAA 22281 |||||||| | || ||||| ||| | || || ||| | ||| ||| | | ||| Sbjct 120827 TCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTAAATTTCCTTAGAGAA 120769 Query 22282 ATTCAATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCA 22340 || ||| || || || ||| ||| | |||| | | |||||| |||||| | | || Sbjct 120768 ATACAAATACCGGAAGCTAGAATGTAT-TATGCTTTTCAAATGTCTATTGAACAAATACA 120710 Query 22341 CGCGGAAACATATTC------TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAA 22392 ||||| ||||| ||| ||| | || | | ||| ||| |||||| | Sbjct 120709 TAGTGAAACTTATTCATTACTTATTGATAGATATATT-ACT----GAAATTAAAGA---A 120658 Query 22393 CAACGAAACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTG 22451 | | || | || || ||| | || ||| || | | || || || ||||| || Sbjct 120657 CGTCAAATGCTCTTTGAAGCAATTTCTCAT-ATTGAAGCTGTAAAAAAGAAAGCAGAATG 120599 Query 22452 GGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGT 22511 ||| ||||||||||| ||| || || || || ||| | |||||| ||| |||| Sbjct 120598 GGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATTGGATT--CTGT 120541 Query 22512 G--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCG 22568 | |||||||| ||| | |||||||| ||| ||||||||||| |||||||| |||||||| Sbjct 120540 GCTGTTGAAGGAATTCTATTTTCTGGTAGC-TTTTGTGCAATTTTTTGGCTTAAAAAACG 120482 Query 22569 TGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCA 22628 || | ||||||| || || || ||||| ||||| | ||||| || ||||| ||||| || Sbjct 120481 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 120422 Query 22629 TACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAAC 22688 | | |||||||| ||| | ||||| || | | | | |||| | ||| | | Sbjct 120421 TGCTGATTTTGCTTGTTTAATATAT--AAAGCCCTTAAAT-TTAAATTACCAGCTCCTAG 120365 Query 22689 TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTT 22748 |||| | || || || | || |||||| ||||| | ||| |||| || | | Sbjct 120364 AGTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCT 120305 Query 22749 ACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGC 22808 || || ||| |||||||| ||| | | ||| ||||||| |||||||||| Sbjct 120304 TCCTGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAATTTGTTGC 120245 Query 22809 AGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT-TATAACGTCGTTAATCCATTTG 22867 ||| | || | ||| || || ||| | || || || ||||| |||||| |||| Sbjct 120244 TGATAGATTACT-TTTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTG 120186 Query 22868 AATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTG 22927 | |||||||| |||||||||||| |||| || || || ||||||||||| |||||||||| Sbjct 120185 ATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGAGTTGGTG 120126 Query 22928 AATACCAAAAAGCAGGTGTTATGG 22951 |||| |||| || || ||||||| Sbjct 120125 AATATCAAATGGCTGGAGTTATGG 120102 >seq281 Length=2690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| |||||| |||||||| ||||| ||| |||||| ||| | || || || || Sbjct 245 TAAAATTTCATCAGAAAATCCTGTTCCTGCCTTACATACAGTTTCATATACCTCCTCCTC 186 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 || || || || || | || | | ||| | || ||| | | ||| || || Sbjct 185 TGTATTGTAAACAGCTAATAGAAAAGTTCCAAAAACCCCATTTCTTTTACCTTTTCCATA 126 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | ||||| || |||| |||| ||||||| | ||| | | |||||| || || Sbjct 125 ACATGCTGCAATAGGAACAACATCAATACTATCAGTAAGTCCATCCACATAATCTTTCTT 66 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAA 145768 || ||||| ||| || ||||| | ||| || ||||||||||| | ||||| | ||| Sbjct 65 AATTTTTAACCAGTTAAGAGATCTTTTTGAAGGTTCATAGCTTGCATTATCATGCAA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348439941638