Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq277 154 2e-32 >seq277 Length=127130 Score = 154 bits (170), Expect = 2e-32 Identities = 495/745 (66%), Gaps = 31/745 (4%) Strand=Plus/Plus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AATTCATTCCTAGAA 92978 |||||||||||| |||||||| || || || | ||| || || | ||||||| || | || Sbjct 120235 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAA 120293 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| |||| ||| |||||| | | | || | | |||| |||||| | | Sbjct 120294 GATCAACAGGAAGAGAGTC-ACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 120352 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACG 93095 |||| | ||||||| | |||| ||| | || | | || || ||||| || | Sbjct 120353 ATTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCT--TTATATATTAAACAAG 120410 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || | ||| | |||||| || || || | ||||| ||||| | || | Sbjct 120411 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 120470 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||| ||||| || |||||||| |||| | ||| ||||||||||| | || | Sbjct 120471 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 120530 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT---GCGGAATTACTGCTGA 93272 |||| || || ||| | | ||| | ||| |||||| | | |||| | | Sbjct 120531 CTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAAT------TCA 120584 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT-AGTGT-TTCGATAGCGTT 93330 ||||||| ||||| || ||||| || || |||| | | | | || || | Sbjct 120585 TCCATTTAGTTGCCCATTCTGCTTTCTTTTT--TACAGCTTCAATATGAGAAATTGCTTC 120642 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAATAC 93388 ||| || | || || | ||| || || || ||| |||| || | | ||||| Sbjct 120643 AAAGAGCATTTGACGTTCTT--TAATTTCAGTAATATATCTATCAATAAGTAATGAATAA 120700 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTTCCGT 93447 ||||| ||| | | || || | ||||| || | || | ||| ||||||||||| Sbjct 120701 GTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTAGCTTCCGG 120759 Query 93448 GATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || || | |||| | || |||| | || | | ||||| | || |||||||| || Sbjct 120760 TATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTG 120818 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || || || | || || ||||||||| | ||| |||||||| | |||| Sbjct 120819 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCC 120878 Query 93567 AATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||| ||| ||||| ||||| | |||||| | ||||||||| ||||| ||| Sbjct 120879 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 120937 Query 93626 TTTTTGTACATATCCCATATGTCTT 93650 ||||| ||||| ||| || |||| Sbjct 120938 TTTTTATACATTGACCAAATATCTT 120962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858649125160