Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq285 147 2e-30 seq247 131 1e-25 >seq285 Length=70399 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| || | | Sbjct 187 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 246 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| ||||| || || ||||| |||||| Sbjct 247 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 306 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| ||||||||| Sbjct 307 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 366 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||| ||||| |||| ||||| Sbjct 367 ATTCAAAAAGAGTCCACTTTACACTTAGT 395 Score = 123 bits (136), Expect = 2e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| |||||||| |||||||| || ||||| |||||||||||| | || ||||| || || Sbjct 42 AAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAACGTTTAATCTTTGCAGGAAA 101 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| ||||||||| | || |||| || ||||||||||||||||| || || |||| Sbjct 102 ACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATTCAAAAAGAGTCTACTTTACA 161 Query 22422 TTTAGTTTTGCGA 22434 |||||| ||| || Sbjct 162 TTTAGTATTGAGA 174 >seq247 Length=95557 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 43059 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 43000 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || ||| || || || |||||||||||||| || ||| Sbjct 42999 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGAT 42940 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || || || || || ||| | || | || || ||| Sbjct 42939 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 42880 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || || || || || ||||| | |||||||| || Sbjct 42879 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATT 42845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726419330585