Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq285 138 3e-27 seq247 127 5e-24 >seq285 Length=70399 Score = 138 bits (152), Expect = 3e-27 Identities = 174/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 288236 TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATAT 288295 ||| ||||| ||| || | ||||| || || | || | ||| |||||||| || | Sbjct 423 TTCTTACAT-TCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGT 365 Query 288296 TATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTT 288355 | || || | ||| || | || || ||||||||||||||||| ||||||| ||| |||| Sbjct 364 TGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTT 305 Query 288356 GAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGC 288415 || | |||||||||||| ||||| || || || || || || || || || | ||| Sbjct 304 GATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTG 245 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| | ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 244 AAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 187 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| | ||| | ||| | || |||||||| || || ||||| | | Sbjct 185 CCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 126 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||||||||| ||||| | ||| |||||| | |||| Sbjct 125 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGG 66 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 ||||| || ||||| || || || || || || || || || | ||| Sbjct 65 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATC 19 >seq247 Length=95557 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | ||| || || |||||||| ||||| | || || | Sbjct 42839 AGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 42898 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| ||||| ||||| || |||||||||||||||||| | || || || || Sbjct 42899 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCC 42958 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || || || |||| |||| | ||| ||||| | ||| Sbjct 42959 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 43018 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || | ||| ||||| || || ||||| Sbjct 43019 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 43056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649729674502