Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq247 129 1e-24 seq285 107 5e-18 >seq247 Length=95557 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| | || | || | ||| |||||||| |||| |||||||||| | ||| Sbjct 42835 TCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGT 42894 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| |||||||| || ||||| |||||||| || || ||| ||| || Sbjct 42895 TCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACC 42954 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| |||||| ||| || || | || || | | ||| || ||||| Sbjct 42955 CTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAA 43014 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||| ||||||||||| Sbjct 43015 TGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTG 43053 >seq285 Length=70399 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||||||| | ||| | ||| ||||| ||||| | |||||| |||| | ||| Sbjct 408 TCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 349 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 348 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 289 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||||||| ||| || || | || |||| | || || ||||| Sbjct 288 TTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAA 229 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || ||||| || Sbjct 228 AGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTG 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916932575703