Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq277 244 1e-59 >seq277 Length=127130 Score = 244 bits (270), Expect = 1e-59 Identities = 590/883 (67%), Gaps = 39/883 (4%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||||||| ||||||| ||||||| || || || || |||| Sbjct 120103 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 120162 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| ||| ||||| ||||||| |||||||| || || || | | || | Sbjct 120163 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 120220 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | || | || | ||||| ||||||||||| || |||| ||| ||| | Sbjct 120221 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA 120280 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109 || |||||||| || | || |||| | || |||||| | |||| | | ||| Sbjct 120281 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 120340 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163 || ||| |||| | | || | | | || | | || ||||||| | Sbjct 120341 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 120391 Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | | |||||| ||||||||| ||| | ||||||||| | ||| || | |||| Sbjct 120392 GCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 120451 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 |||||||| || | ||| ||||| | || | |||||||| |||||| ||||| ||||| Sbjct 120452 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 120510 Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 | | |||||||| | ||| |||||||| || ||| | | || | | | | |||| Sbjct 120511 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 120570 Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | |||||| |||||||| ||| ||| ||||| || ||| ||| ||| Sbjct 120571 TCGC------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTC 120624 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| ||||| | | ||||| | | || || ||||| |||| Sbjct 120625 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATC 120684 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| | Sbjct 120685 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 120744 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 |||||||| | || ||| | || ||| || | ||||||||||| |||| Sbjct 120745 CATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 120804 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633 || |||||||| || |||||||| || | ||||||||| ||||||||||||||| || Sbjct 120805 AATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTC 120864 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693 ||| | | ||| |||||| || |||||| || ||||| ||| ||| ||| Sbjct 120865 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCA 120921 Query 37694 AAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 ||| || || ||||||||| | ||||||||| ||| Sbjct 120922 AAACGACGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 120964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314512176360