Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq285 215 1e-50 seq247 197 3e-45 seq26 136 8e-27 >seq285 Length=70399 Score = 215 bits (238), Expect = 1e-50 Identities = 184/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | ||| |||||||| | ||| || ||||| || || || |||||||| Sbjct 413 CCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 354 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||||||| || |||| ||||||||| |||||||| | | ||||||||| || || Sbjct 353 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 294 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||||||||| || ||||| ||||| ||||| ||| || ||| Sbjct 293 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACT 234 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| |||||||| ||||| || || |||||||| Sbjct 233 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 187 Score = 167 bits (184), Expect = 5e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | || ||||| || | |||||| ||||| || || || || |||| Sbjct 187 TACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAG 128 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||| || |||| ||||||||| |||||||||| | ||||||||| || | Sbjct 127 AGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTG 68 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||||||||||||||| || ||||| ||||| ||||| ||| || | Sbjct 67 GGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAA 8 Query 82762 CTTCCAA 82768 ||||||| Sbjct 7 CTTCCAA 1 >seq247 Length=95557 Score = 197 bits (218), Expect = 3e-45 Identities = 169/209 (81%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||| || || ||||| ||||| || ||||||||| ||||||| ||||| Sbjct 42848 ACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTCC 42907 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| |||||||||||||| || | |||||||| ||||| || || |||||||| || Sbjct 42908 AATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTGG 42967 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||| ||||| ||||| |||||| |||||||| || || ||||| Sbjct 42968 ATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTTT 43027 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || ||||| Sbjct 43028 CCTGTTAAAGTTTTGACAAAAATTTGCAT 43056 >seq26 Length=24949 Score = 136 bits (150), Expect = 8e-27 Identities = 105/125 (84%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || |||||||||||||||||||||||||| || ||||| ||||| ||||| |||| Sbjct 24949 GGTGGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGT 24890 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 || ||||||||||| || ||||| |||||||| ||||| ||||| |||||||| || || Sbjct 24889 TCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTA 24830 Query 82818 TTTTT 82822 || || Sbjct 24829 TTCTT 24825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823312884751