Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093605.1_202017-04- 14] 309 sequences; 9,082,089 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq262 302 6e-77 seq277 239 6e-58 >seq262 Length=70338 Score = 302 bits (334), Expect = 6e-77 Identities = 1178/1827 (64%), Gaps = 45/1827 (2%) Strand=Plus/Minus Query 75412 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG 75471 || ||| || || || ||||||||||| |||| || || |||||||| || || Sbjct 40042 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 39983 Query 75472 TTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGC 75531 || | | | | | || | |||||||| |||| || || |||| | | | Sbjct 39982 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 39923 Query 75532 TCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAA 75591 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || | Sbjct 39922 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATA 39863 Query 75592 AA-CTTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATA 75647 || || | | ||||| || |||| | | ||||||||||| | ||||| | | Sbjct 39862 AAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATG---CTGCCATTATTTG 39807 Query 75648 TAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGA 75704 ||| |||||| | | | ||||| ||| || ||| |||| | | || | Sbjct 39806 CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCA 39747 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 ||| ||||| || | || || ||||| | |||||| ||| ||||| || || Sbjct 39746 AATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGG 39687 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 || |||| || | | |||||||| || |||||||| | ||| || || || ||||| | Sbjct 39686 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 39627 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 | | | |||| | ||| | | ||||||| | || ||||||| || | | || Sbjct 39626 GAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCC 39567 Query 75885 AATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 |||| ||||| | || |||| ||| |||| | ||| |||||| ||| || || | Sbjct 39566 AATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTAC 39507 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | ||| || || |||||||||||| | ||||| ||||| || || || || || | Sbjct 39506 TCGCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAG 39447 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTC 76059 | || | || | ||||| || ||| ||||| | ||||| || |||| || | Sbjct 39446 CGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCT 39387 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 ||||| | | || | | | | ||||| ||||| || || |||| ||||| Sbjct 39386 CAGACT--CGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAAT 39329 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 || | || | |||||| ||| || ||| | ||| | || ||||| || Sbjct 39328 CCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAAC 39269 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | |||||| | ||| || || || || || || |||| || ||| Sbjct 39268 GTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA 39209 Query 76240 ATCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | || | ||||| | || | ||| | ||||| || |||||||| Sbjct 39208 ATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACA 39149 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| || || | | | | |||| ||| || || ||||||| ||||| | Sbjct 39148 GACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAAC 39089 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAAC 76410 |||||||| | ||||| ||||| || |||| || || || || |||||| || Sbjct 39088 AATAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAAT 39032 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 ||| || || || || ||||| || | | | || | ||| | | ||| || | Sbjct 39031 AAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCT 38974 Query 76471 TATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | || | ||| || || | | | | ||||| | | ||||| | | ||| | Sbjct 38973 T-TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAAT 38916 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 |||| ||||||||||| | ||| || ||||||| || ||||| | | ||| || Sbjct 38915 CATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTT 38856 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| | || ||| | || ||| || |||||||| | ||| || ||| ||| | ||| | Sbjct 38855 GATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGATATCGC 38796 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | ||| ||||| ||||| |||||| | | || | ||||| | || |||| Sbjct 38795 GACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAA 38736 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 ||||| || || | ||| || || || |||| || || || || ||||| | Sbjct 38735 CGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAA 38676 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 |||| || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||| Sbjct 38675 TATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCAT 38616 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 ||||||| |||||| ||| | | | ||||||||| | | | || | || | Sbjct 38615 TTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCAC 38556 Query 76887 CTGCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 | || | ||| | || | ||| ||| | ||||||| |||| || | ||| Sbjct 38555 CCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGA 38498 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| || || | || | |||||| ||||||||| | | ||| |||| ||| Sbjct 38497 ATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATT 38438 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 38437 AAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAG 38378 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 | ||||| ||||| | |||||| || || ||| ||||||| | ||| || || Sbjct 38377 TGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGG 38318 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAAC 77183 || ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || Sbjct 38317 TCTTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGG 38259 Query 77184 CAAAATAGTTGTATGAAAAGTCTCTTT 77210 ||||||| | |||| ||| || |||| Sbjct 38258 CAAAATAATCGTATTCAAAATC-CTTT 38233 >seq277 Length=127130 Score = 239 bits (264), Expect = 6e-58 Identities = 590/880 (67%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 120089 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 120148 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 120149 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 120208 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 120209 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 120267 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | ||||||| || || || | || || |||| || |||||| | | Sbjct 120268 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 120327 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 120328 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 120384 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||||||| ||| || |||||||| | |||||| Sbjct 120385 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 120444 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 120445 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 120503 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 120504 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 120563 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 | || | || ||| || ||||| | ||||| || || || || |||||| Sbjct 120564 CAAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT 120622 Query 46846 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTA 46905 || || || | |||||| | | ||| | | | || ||| |||| || Sbjct 120623 TCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTA 120682 Query 46906 TCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 || || | || || ||| |||| ||| || | |||||||| ||| ||||| | | Sbjct 120683 TCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCAT 120740 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 || | ||| ||||| | || |||| ||| || || | | | || || || Sbjct 120741 AATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCA 120800 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||||| |||||||| ||||| || |||| ||| ||||||| | ||||| Sbjct 120801 TAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAG 120860 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | || | | ||| || | |||||| || ||| | |||||||| || Sbjct 120861 GGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCC 120920 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | || ||||| || |||||||||||||| ||| ||||| Sbjct 120921 AAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 120960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931646290880