Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2559 154 2e-32 >seq2559 Length=3356 Score = 154 bits (170), Expect = 2e-32 Identities = 564/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || |||| ||| | |||||||||||||||||||| || | | || ||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 15972 CCATAAAATCAAAGGGATTAGTA--GCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| ||||||| ||||||| | | || | || | || || || || || | || Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGAT-TTTTGGAATATCCAAG-GCAAAAAG 1736 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTCCTATAA 16088 ||||||||| || |||||||| |||||||| || |||||| | |||| || || |||| Sbjct 1737 TAATCTATCAGCAACAAATTCAATATATTGGGCCA-TAAGTCTCGAATTCATACCAATAA 1795 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || ||||||| | | ||| | | ||| | |||| |||||| |||| Sbjct 1796 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 1855 Query 16149 TATCGGTG-GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | | | || ||| | | | | || || ||| |||| | |||| ||| || Sbjct 1856 T-TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCA 1914 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 || || ||| || ||||| || | || |||||||| || ||||| || | || ||| Sbjct 1915 AAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 1974 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || ||| ||||| || | ||| || || ||| ||| || ||||| | || || Sbjct 1975 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCCT 2034 Query 16328 TCAACAGATGCAAAAGCGATTAA-TCGTTCCGCGTACG-TAGCATCTTTATTACGAATCC 16385 ||||||| || || | | ||| || ||| || | | | || || ||| |||| Sbjct 2035 TCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGC-TCAGAATT---CATCC 2089 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 |||| | ||||||| ||||| | ||||| | || || || || | ||| | Sbjct 2090 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAAGA 2149 Query 16446 --ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 |||| | ||| | ||| || | ||||| ||||||| ||||| || |||| Sbjct 2150 GCATTTGAC--GTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTTC 2207 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 ||||| | || || | || ||||| |||| | || ||| |||| |||||| Sbjct 2208 ACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATTTG 2267 Query 16564 TACT--TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || | || | | ||| | | | || | ||| || | || ||||| |||||||||||| Sbjct 2268 TATTTCTCTAAGGAAATT--TACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 2325 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAA 16678 || || || || | | || || |||| | |||| ||| | ||||| | | |||| Sbjct 2326 AAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTC---TTTAAGACTTTCCCAA 2382 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 ||| | ||||| || ||| | |||||| | |||||| || | || ||| Sbjct 2383 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 2442 Query 16739 TTATACATTTTCCAAATATCATT 16761 ||||||||| ||||||||| || Sbjct 2443 TTATACATTGACCAAATATCTTT 2465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511393585433920