Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2559 250 3e-61 seq2903 197 2e-45 >seq2559 Length=3356 Score = 250 bits (276), Expect = 3e-61 Identities = 591/875 (68%), Gaps = 31/875 (4%) Strand=Plus/Plus Query 23819 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 23875 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1590 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1649 Query 23876 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 ||||||||||||| | ||| ||| ||||| |||| | ||||| | ||| || || Sbjct 1650 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1709 Query 23936 GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 |||| || || |||| || ||| |||||||| || ||||| || |||||| Sbjct 1710 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 24111 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 1883 Query 24112 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 24168 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 1884 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 1942 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1943 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2002 Query 24229 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTT 24287 | | | |||| | | |||||||| | ||||||||| || || || |||||| |||| Sbjct 2003 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2061 Query 24288 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 2062 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 2120 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 24406 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 2121 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 2180 Query 24407 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 2181 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 2238 Query 24465 CCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATT 24523 | || | ||| |||||| || | || |||| |||| || || | ||||||| || Sbjct 2239 GCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 2297 Query 24524 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 24583 ||| | || || || ||||| || ||||| || || || |||| ||| ||||||| | | Sbjct 2298 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 2357 Query 24584 TTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641 ||| ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 2358 TTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCA 2415 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 |||||| || || || || ||||||||||| Sbjct 2416 GTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 2450 >seq2903 Length=4097 Score = 197 bits (218), Expect = 2e-45 Identities = 702/1081 (65%), Gaps = 32/1081 (3%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 52865 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 1312 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 1254 Query 52866 GACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTA 52925 |||| |||| || |||||||||||| || || || | | | | | || | | | Sbjct 1253 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1194 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1193 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1134 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 53044 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 1133 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 1075 Query 53045 A-GGT--TTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | |||| ||||| ||| || | | ||||| | | ||| | | |||| Sbjct 1074 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 1015 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 1014 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 955 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 954 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 895 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 894 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 835 Query 53282 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 53336 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 834 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 777 Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 53396 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 776 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 717 Query 53397 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 716 CGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 657 Query 53457 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 53513 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 656 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 601 Query 53514 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 600 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 541 Query 53573 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 || || ||| | ||| | || |||||| || || || | |||||| | || Sbjct 540 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 481 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTAT 53688 || ||| || || || || || | || ||||||||| |||| || | | Sbjct 480 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TAT-TTT 423 Query 53689 TACAAAC--ATGTTCAATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || ||| || || | | ||||||| ||||||||||| ||||| || || | | Sbjct 422 TATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGC 363 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 362 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 303 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 302 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 243 Query 53865 G 53865 | Sbjct 242 G 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697435530880