Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2559 233 2e-56 >seq2559 Length=3356 Score = 233 bits (258), Expect = 2e-56 Identities = 579/861 (67%), Gaps = 27/861 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||||||||| ||||| || ||||| |||| | ||||||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCGCATC-CCAATTCCAACA 16061 |||| ||||||||||||| ||| | ||| ||| | | || |||| | || | Sbjct 1679 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAA 1735 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATT 16120 ||||||||| || |||||||| ||||| || ||| || || | | ||||| || || Sbjct 1736 GTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATA 1794 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | |||||| | | || | ||| ||| |||| | | ||| ||||| |||| Sbjct 1795 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 1852 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAA---TAAGTG-TTTAAACATTATACA 16236 || | || ||| ||| | | | ||||| |||| | |||| | |||| ||| Sbjct 1853 TGATTTGTTG-TACTCTAGG-AGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 1910 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||||| ||| | ||||| || | ||| || | || || |||||||| || || Sbjct 1911 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 1970 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| |||||||||| |||||| || || ||| ||||||||| | || Sbjct 1971 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 2030 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||| ||| | || ||| | | | || | | ||| || Sbjct 2031 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAA--TTC-AT 2087 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | |||||| | ||| ||| | || | ||||| | || Sbjct 2088 CCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA- 2146 Query 16477 TAAATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 | | |||| |||||| | || |||||| |||| || ||||| ||| || Sbjct 2147 -AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTT 2205 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||| || | || || | || |||||| ||||| | ||||||||| | |||| Sbjct 2206 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 2265 Query 16595 TGTACTTCAGAGTAA--AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| ||| ||| || || ||||||||||||| |||| || ||||| || || | Sbjct 2266 TGTATTTC--TCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAG 2323 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || | | | ||| ||||||| | |||| ||| ||| || ||| | Sbjct 2324 CAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 2383 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | | ||||| || ||| | ||||| | |||||| || || |||| |||| Sbjct 2384 CTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTTT 2443 Query 16773 TATACATTTTCCATATGTCTT 16793 |||||||| ||| || |||| Sbjct 2444 TATACATTGACCAAATATCTT 2464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493175761600