Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2559 253 2e-62 >seq2559 Length=3356 Score = 253 bits (280), Expect = 2e-62 Identities = 594/874 (68%), Gaps = 37/874 (4%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||| ||||||| ||||| | | | | ||| | | | | | || |||| Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 1738 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGT 14092 ||||||| |||| || ||||||||||| | ||| || || | |||||||||| || || Sbjct 1739 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAGA 1797 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||||||| | | | || ||| | | |||| | ||||| || ||| || Sbjct 1798 TCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 1856 Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205 | || || | | || || || | |||| || |||| | |||||||| Sbjct 1857 --TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 1910 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 1911 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 1970 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | | Sbjct 1971 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAA 2029 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| ||||| ||| || | || | || ||| |||| ||| | ||| | Sbjct 2030 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTC---A 2086 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||||| | |||||||| | ||| ||||| | | || || ||| || | || Sbjct 2087 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA 2146 Query 14445 ATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | | || | | | |||||| | | ||| ||| ||||||||||||| ||| || Sbjct 2147 AGAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTT 2205 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||| ||||| | ||| |||| || |||||| ||||| | ||||||||| | | Sbjct 2206 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 2265 Query 14564 TGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 |||| |||| || ||| || | || || ||||| |||| ||||||||||| || | Sbjct 2266 TGTATTTCTCTAAGGAAA--TTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAG 2323 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGCTGAGTTTTTTCC 14678 |||| ||||| || | | ||| ||||| || || |||| | | || ||| || Sbjct 2324 CAAAGAATGCTAAAACATATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCC 2380 Query 14679 AATCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA-GCAACAGC 14736 |||| ||| ||| | | ||||| | ||| || | | || ||||| | || |||| Sbjct 2381 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTC-AGTAACCCAAAACGACGCTTCAGC 2438 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAAT 14770 ||||||||||||| ||| || |||||| |||| Sbjct 2439 TTTTTTATACATTGACCAAATATCTTTAATTAAT 2472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482325968534080