Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2559 102 7e-17 >seq2559 Length=3356 Score = 102 bits (112), Expect = 7e-17 Identities = 370/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || ||||| ||||||||| |||||| | || Sbjct 2463 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGA 2404 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || | | ||| || |||||||| || ||||| |||| ||| ||||||| || Sbjct 2403 TCTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAA 2344 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || || || || || || ||| ||||||||||||| || || || | | || Sbjct 2343 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAA- 2285 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | ||| | |||| || ||| | ||| | |||||| || | | Sbjct 2284 ATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTA 2225 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| |||| ||||| |||| || |||| || | | || || Sbjct 2224 TTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGA-AATT 2166 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || || || || | ||||| | Sbjct 2165 A--AAGAACGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAG 2108 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 |||| ||| ||| |||||||| || | || | | || || || || | || Sbjct 2107 CAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTTGCTGAAAGAATTATT 2052 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 | ||| || || ||||| || | ||||| || |||||| ||||| |||||| | Sbjct 2051 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT 1992 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 1991 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAA 1932 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||||| |||||||||| || |||| || Sbjct 1931 GGTCTCCATGCTGATTTTGCTTGTTTAATATA 1900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748257307520