Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2559 228 1e-54 seq2903 192 7e-44 >seq2559 Length=3356 Score = 228 bits (252), Expect = 1e-54 Identities = 591/879 (67%), Gaps = 39/879 (4%) Strand=Plus/Plus Query 33266 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1590 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1649 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| ||||| Sbjct 1650 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1709 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 |||||| || |||| || ||| |||||||| || || ||||| |||||| Sbjct 1710 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | ||||||| || || || | ||| ||||||| || |||||| | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG--ATGT 33560 ||||| || || | || ||| || | || ||| | | ||| || | Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC----TCT--AGGAGCTGGTAATTT 1883 Query 33561 AA---TAAATG-TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTAC 33615 || ||| | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 1884 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 1942 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 |||| | ||| |||||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1943 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2002 Query 33676 TGGAAGCGAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 | | | | || | | || ||||| | |||||||| || ||| || |||||| ||| Sbjct 2003 TTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2061 Query 33735 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 2062 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 2120 Query 33794 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 33849 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 2121 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 2176 Query 33850 CATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 ||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 2177 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 2234 Query 33908 AAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA 33966 ||| | || | ||| |||||| || | || || | |||| || || | |||||| Sbjct 2235 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 2293 Query 33967 AATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 | ||||| | || || |||||||| || ||||| || || || |||| ||| ||||||| Sbjct 2294 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 2353 Query 34027 ATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTC 34084 | |||| ||| || || | | |||||| | |||||| | || ||| | ||| Sbjct 2354 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 2411 Query 34085 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||| |||||| || || || || ||||||||||| Sbjct 2412 TTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 2450 >seq2903 Length=4097 Score = 192 bits (212), Expect = 7e-44 Identities = 699/1080 (65%), Gaps = 26/1080 (2%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62103 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 1312 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 1254 Query 62104 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1253 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1194 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1193 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1134 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62282 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 1133 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 1075 Query 62283 A-GGT--TTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | |||| |||||| ||| || | | ||||| | | ||| | | |||| Sbjct 1074 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 1015 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 | |||||| ||| |||| | | || | |||||| || ||||| ||| || Sbjct 1014 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 955 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 ||||| | |||||| ||| ||||| || |||| | || || | |||||| || Sbjct 954 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 895 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 894 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 835 Query 62520 CCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA---CGGTA 62574 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 834 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 777 Query 62575 CAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62634 ||| | |||||| |||||| ||||| || ||| || |||||| | Sbjct 776 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 717 Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 | ||||| || | || || || || | ||| || || || | || | ||||| || Sbjct 716 CGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 657 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG 62753 |||||| || | ||||||| | | ||| || || | || ||| ||| Sbjct 656 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAG 599 Query 62754 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | ||||| ||| || | ||||||| ||||| || | || | |||||| ||| Sbjct 598 CATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 539 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 538 CGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 479 Query 62873 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTAC 62929 ||| || || || || || | || ||||||||| || | || ||| Sbjct 478 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 420 Query 62930 AAAC--ATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 ||| || || | | ||| ||| ||||||||||| ||||| || || | | | Sbjct 419 CAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAG 360 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||| ||| || || ||||| | ||||| | |||||||| ||||||| || | Sbjct 359 TGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGT 300 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 |||| || | || ||||| |||||| ||| ||||| || || || ||||| |||| Sbjct 299 TACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791966423680