Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2559 226 3e-54 seq1220 170 2e-37 >seq2559 Length=3356 Score = 226 bits (250), Expect = 3e-54 Identities = 590/874 (68%), Gaps = 38/874 (4%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 1738 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | |||||||||| ||||||| Sbjct 1739 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAATTCATACCAATAAGAT 1798 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 1799 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 1853 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 1854 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 1910 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||||||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 1911 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 1970 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 1971 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 2030 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | | | | | |||| Sbjct 2031 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGCTCAGAATTCATCC 2089 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || |||||||||||||| ||| || || || | ||| | Sbjct 2090 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAAGA 2149 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || | || | | |||| |||| || | ||| ||| ||| Sbjct 2150 ---GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 2206 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || || | Sbjct 2207 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTAGCTTCCGGTATT 2265 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | |||||||||||||| | || Sbjct 2266 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGC 2324 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | || ||| ||||| | | |||| ||||||| | | ||||| Sbjct 2325 AAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 2381 Query 12103 ATCATCTA-AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 ||| |||| ||||| || ||| | ||||||| |||||| || | | || Sbjct 2382 ATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTT 2440 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAAT 12195 |||||||||| ||| ||||| | || ||||| Sbjct 2441 TTTTATACATTGACCAAATATCTT--TAATTAAT 2472 >seq1220 Length=885 Score = 170 bits (188), Expect = 2e-37 Identities = 334/491 (68%), Gaps = 2/491 (0%) Strand=Plus/Minus Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 |||| ||||||| || || | |||||| | || || ||| | || | || || || Sbjct 810 ATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTG 751 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || |||||| ||| | |||| |||||| | | | ||| || | || ||||||||| | Sbjct 750 ATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCT 691 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || ||||| | ||| | ||| |||||||| | | || || | Sbjct 690 CCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAG 631 Query 38301 TCCACCTGCATGTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359 ||||| ||| || || || | ||||||| ||| || ||||| ||||| | || Sbjct 630 ACCACCCGCA-GTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTA 572 Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419 | || || || |||| ||||||| ||||||||||| |||||| || | Sbjct 571 TTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTG 512 Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTT 38479 ||||| | ||| || | |||||| | || |||||| ||| || | | |||||||| Sbjct 511 AATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTT 452 Query 38480 CTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTT 38539 | | | || | || |||||||| | |||||||| ||| |||| ||| || | ||||| Sbjct 451 CAAGTGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTT 392 Query 38540 GTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTA 38599 |||||||||| | | ||| || | |||||| ||||| ||| |||||| ||||| | Sbjct 391 GTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGA 332 Query 38600 TTCCAAAATAA 38610 |||||||| Sbjct 331 AGGCAAAATAA 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468505731040640