Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2559 150 2e-31 >seq2559 Length=3356 Score = 150 bits (166), Expect = 2e-31 Identities = 563/866 (65%), Gaps = 33/866 (4%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||||| |||||||| || || || || |||| | ||| ||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| ||||||| ||||| | || | ||||| | | ||| | | | || Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 1738 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC-AATTCATACCGATCAAT 21364 ||||||| || |||||||| |||||||| ||| || || | |||||||||| || | Sbjct 1739 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAGA 1797 Query 21365 TTTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTA 21422 | |||||||||| | |||| |||| || |||| | || ||||| || | Sbjct 1798 TCAACAGGAAGAGAGTCA--CAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 1855 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAA---TAATTG-TTTAAACATCAAACAT 21478 | | | || |||| | || || || || ||| | |||| | || ||||| Sbjct 1856 TTTGTTGTACTCTAGGAG--CT--GGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 1911 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||| ||| | ||||||||| | ||| || | ||||||||||||||| | || Sbjct 1912 GCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 1971 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAAT 21597 ||||| | ||| | ||||| | |||||| |||| | |||| ||| || ||||| | ||| Sbjct 1972 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAAT 2030 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT-- 21655 || ||||| ||| ||| ||| | || |||| | | |||| | | ||| Sbjct 2031 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAA---AGATCGCTCA--GAATTC 2085 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA--ATCAATTGTATCAATAGCTT 21713 |||||||| |||||||| ||| ||||||| |||| ||||| | ||| || Sbjct 2086 ATCCATTTAGTTGCCCATTCTGC--TTTCTTTTTTACAGCTTCAATATGAGAAATTGC-- 2141 Query 21714 TTAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || ||||| |||| ||| | | || || || ||| Sbjct 2142 TTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATA 2201 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 ||||| |||||| | ||| || | || ||||| | ||| | ||| || || | Sbjct 2202 AGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGG 2261 Query 21832 ACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGG 21890 ||| | || || |||| | || |||||||| | || || |||||||| | Sbjct 2262 TATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTG 2320 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCC 21950 | ||||| ||||| || | || ||| ||||||| || ||| ||| | | ||| || Sbjct 2321 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCC 2380 Query 21951 AATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010 ||||| ||||| || ||| | ||||||||| |||||| || ||| | Sbjct 2381 AATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTT 2440 Query 22011 TTTTATACATAATCCAGATATCATTA 22036 |||||||||| ||| ||||| ||| Sbjct 2441 TTTTATACATTGACCAAATATCTTTA 2466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879151637440