Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2559 266 8e-66 seq2980 100 7e-16 >seq2559 Length=3356 Score = 266 bits (294), Expect = 8e-66 Identities = 592/864 (69%), Gaps = 37/864 (4%) Strand=Plus/Minus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATT--TCCACTGATA 22162 || || ||||| ||||| || | |||| | | ||||||||| | || | |||| Sbjct 2447 TATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAA--GATA 2390 Query 22163 AGACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCAT 22222 | |||||| || |||| ||| ||| |||||||||||||||| || |||||| Sbjct 2389 CTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAAATATGTTTTAGCAT 2330 Query 22223 TCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAA 22281 |||||||| | || ||||| ||| | || || ||| | ||| ||| | | ||| Sbjct 2329 TCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTAAATTTCCTTAGAGAA 2271 Query 22282 ATTCAATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCA 22340 || ||| || || || ||| ||| | |||| | | |||||| |||||| | | || Sbjct 2270 ATACAAATACCGGAAGCTAGAATGTAT-TATGCTTTTCAAATGTCTATTGAACAAATACA 2212 Query 22341 CGCGGAAACATATTC------TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAA 22392 ||||| ||||| ||| ||| | || | | ||| ||| |||||| | Sbjct 2211 TAGTGAAACTTATTCATTACTTATTGATAGATATATT-ACT----GAAATTAAAGA---A 2160 Query 22393 CAACGAAACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTG 22451 | | || | || || ||| | || ||| || | | || || || ||||| || Sbjct 2159 CGTCAAATGCTCTTTGAAGCAATTTCTCAT-ATTGAAGCTGTAAAAAAGAAAGCAGAATG 2101 Query 22452 GGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGT 22511 ||| ||||||||||| ||| || || || || ||| | |||||| ||| |||| Sbjct 2100 GGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATTGGATT--CTGT 2043 Query 22512 G--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCG 22568 | |||||||| ||| | |||||||| ||| ||||||||||| |||||||| |||||||| Sbjct 2042 GCTGTTGAAGGAATTCTATTTTCTGGTAGC-TTTTGTGCAATTTTTTGGCTTAAAAAACG 1984 Query 22569 TGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCA 22628 || | ||||||| || || || ||||| ||||| | ||||| || ||||| ||||| || Sbjct 1983 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 1924 Query 22629 TACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAAC 22688 | | |||||||| ||| | ||||| || | | | | |||| | ||| | | Sbjct 1923 TGCTGATTTTGCTTGTTTAATATAT--AAAGCCCTTAAAT-TTAAATTACCAGCTCCTAG 1867 Query 22689 TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTT 22748 |||| | || || || | || |||||| ||||| | ||| |||| || | | Sbjct 1866 AGTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCT 1807 Query 22749 ACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGC 22808 || || ||| |||||||| ||| | | ||| ||||||| |||||||||| Sbjct 1806 TCCTGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAATTTGTTGC 1747 Query 22809 AGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT-TATAACGTCGTTAATCCATTTG 22867 ||| | || | ||| || || ||| | || || || ||||| |||||| |||| Sbjct 1746 TGATAGATTACT-TTTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTG 1688 Query 22868 AATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTG 22927 | |||||||| |||||||||||| |||| || || || ||||||||||| |||||||||| Sbjct 1687 ATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGAGTTGGTG 1628 Query 22928 AATACCAAAAAGCAGGTGTTATGG 22951 |||| |||| || || ||||||| Sbjct 1627 AATATCAAATGGCTGGAGTTATGG 1604 >seq2980 Length=5077 Score = 100 bits (110), Expect = 7e-16 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| |||||| |||||||| ||||| ||| |||||| ||| | || || || || Sbjct 2035 TAAAATTTCATCAGAAAATCCTGTTCCTGCCTTACATACAGTTTCATATACCTCCTCCTC 1976 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 || || || || || | || | | ||| | || ||| | | ||| || || Sbjct 1975 TGTATTGTAAACAGCTAATAGAAAAGTTCCAAAAACCCCATTTCTTTTACCTTTTCCATA 1916 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | ||||| || |||| |||| ||||||| | ||| | | |||||| || || Sbjct 1915 ACATGCTGCAATAGGAACAACATCAATACTATCAGTAAGTCCATCCACATAATCTTTCTT 1856 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGA 145771 || ||||| ||| || ||||| | ||| || ||||||||||| | ||||| | ||| | Sbjct 1855 AATTTTTAACCAGTTAAGAGATCTTTTTGAAGGTTCATAGCTTGCATTATCATGCAAAGT 1796 Query 145772 TTTTACCATTAGCCCCTC 145789 || ||||| || ||||| Sbjct 1795 CTTAACCATGAGTCCCTC 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303299227346192