Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2837 87.8 1e-12 >seq2837 Length=6166 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 16702 CATTTAC-CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || |||| || |||| || || | ||| | ||||| ||||||||||| || || |||| Sbjct 5941 CAATTACACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGT 6000 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | | ||| | | || |||||||| || || ||| | || || |||||||| | Sbjct 6001 AGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGAT 6060 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | ||| | ||||| || || || ||||| ||| || | | | ||| ||| Sbjct 6061 CAGGAGGAATACCCTCCTTATCCTGGATCTTTGC--CTTTACATTCTCAATAGTATCGGA 6118 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAA 16926 || || ||||| |||||||| ||||| || | ||||||||||| Sbjct 6119 AGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAA 6166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405071925095440