Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2559 250 3e-61 seq2903 203 4e-47 >seq2559 Length=3356 Score = 250 bits (276), Expect = 3e-61 Identities = 590/874 (68%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 32345 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 32401 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1590 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1649 Query 32402 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA 32461 ||||||||||||| | ||| ||| ||||| |||| || ||||| | ||| || || Sbjct 1650 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1709 Query 32462 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 32521 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 1710 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 32522 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 32582 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG----AT 32637 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 1883 Query 32638 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 32694 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 1884 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 1942 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1943 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2002 Query 32755 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 32813 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 2003 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2061 Query 32814 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 32872 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 2062 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 2120 Query 32873 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 32932 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 2121 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 2180 Query 32933 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 2181 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 2238 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 | || | |||||| || | || |||| |||| || || | ||||||| ||| Sbjct 2239 GCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTT 2298 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || | || || || ||||| || ||||| || || || |||| ||| ||||||| | || Sbjct 2299 TCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTT 2358 Query 33111 TCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 33168 || ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 2359 TC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAG 2416 Query 33169 CTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||| || || || || ||||||||||| Sbjct 2417 TAACCCAAAACGACGCTTCAGCTTTTTTATACAT 2450 >seq2903 Length=4097 Score = 203 bits (224), Expect = 4e-47 Identities = 704/1082 (65%), Gaps = 30/1082 (3%) Strand=Plus/Minus Query 61849 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 61907 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 1312 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 1254 Query 61908 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1253 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1194 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1193 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1134 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62086 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 1133 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 1075 Query 62087 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62143 | || | |||| |||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 1074 ATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 1015 Query 62144 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62203 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 1014 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 955 Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 954 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 895 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 894 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 835 Query 62324 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 62378 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 834 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 777 Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62438 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 776 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 717 Query 62439 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62498 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 716 CGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 657 Query 62499 TTTCGAAGATCTTCTTATTT-AGATCTT-GCGCTTCCAGGCTATCAAATGG-ATAATTTA 62555 ||| || || | |||||| | |||| || | ||| | || | || ||| | Sbjct 656 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 601 Query 62556 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 600 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 541 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 540 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 481 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TT 62731 || ||| || || || || || | || ||||||||| || | || || Sbjct 480 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 422 Query 62732 ACAAAC--ATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 | ||| || || | | ||| ||| ||||||||||| ||||| || || | | Sbjct 421 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 362 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 361 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 302 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 301 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 242 Query 62908 AG 62909 || Sbjct 241 AG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606211177600