Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2559 113 1e-19 >seq2559 Length=3356 Score = 113 bits (124), Expect = 1e-19 Identities = 293/435 (67%), Gaps = 19/435 (4%) Strand=Plus/Minus Query 243314 TGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 243372 ||||| |||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 2045 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 1989 Query 243373 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGC 243429 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || || Sbjct 1988 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 1929 Query 243430 CTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 243485 || || | || | | | || ||| ||||| | || || ||||| | Sbjct 1928 CTCCATGCTGATTTTGCTTGTTTAATATAT--AAAGCCCTTAAATTTAAATTACCAGCTC 1871 Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 | | | || |||||||||| ||||||| |||||| |||| | || |||| || Sbjct 1870 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 1813 Query 243546 CGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAAT 243604 | || |||| || | |||||||| ||||| || ||| |||| || || || |||| Sbjct 1812 CTCTCTTCC-TGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAAT 1754 Query 243605 TCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAAC 243663 | || || || | | | | || ||||| ||| ||| | |||||| || Sbjct 1753 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAATCTACAACGTTTCTAAT 1695 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || |||| | ||||| || ||||| |||||||| ||||||||||||||||||||| | Sbjct 1694 CCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGA 1635 Query 243724 GTCAGTGATTATCAA 243738 || |||| |||||| Sbjct 1634 GTTGGTGAATATCAA 1620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102833990603600