Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1523 187 1e-41 seq853 152 2e-31 seq1457 140 1e-27 seq1128 120 1e-21 seq2837 113 2e-19 seq1839 109 2e-18 seq705 107 8e-18 seq3101 89.7 2e-12 seq2927 87.8 7e-12 seq2229 87.8 7e-12 >seq1523 Length=11895 Score = 187 bits (206), Expect = 1e-41 Identities = 417/615 (68%), Gaps = 16/615 (3%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| ||||| |||||| | || ||||| | |||||||| ||||| | ||| | | Sbjct 628 AGCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAACGATAC 569 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 |||||| ||| | |||| || ||||| || || || || |||| ||| ||||| Sbjct 568 TGTAGATATTGTTCCAAACGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 509 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 || | || | ||| | || | || || || | ||| || | ||| | || Sbjct 508 AGAAACTGAGCGTCTTATTGGTGATGCAGCAAAGAACCAA--GTTGCTAGAAACCCAGAA 451 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || ||||| | ||||||||||||| | ||||| | | || ||||||| | | |||||| Sbjct 450 AATACAGTTTTTGATGCTAAACGTCTTATTGGTAGAAAGTTTGATGATCAGGCAGTACAA 391 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAA---TCAAAAAGGAAAGCCCTATATT 451207 | || | | || | | | | ||||| | || ||| | ||||| || | Sbjct 390 AGTGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGACAAGCCA-ATCAT 332 Query 451208 CAA-GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 || ||||| || |||||||| || || | ||||||||||||| ||||||| Sbjct 331 CAGTGTAAACTACTTAGGTGAAAAGAAGGAATTCCATGCTGAAGAAATTTCTGCTATGGT 272 Query 451267 TCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAG-TTACTGATGCA 451324 | |||| ||| ||||| || | | ||| ||| |||| || ||| ||| | || Sbjct 271 T-TTACAAAAGATGAAGGAGATCTCTGAAGCATAC-TTGGGTCGCCAAATTAAGAACGCT 214 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 ||| |||||||||| |||||||||||||| |||| || |||||||| || |||||||| Sbjct 213 GTAGTTACTGTTCCAGCTTATTTCAATGACTCACAGCGTCAAGCAACAAAGGATGCAGGT 154 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||||||||| ||||| | |||| ||||| || || || ||||||||| | || Sbjct 153 GCAATTGCTGGTTTGAATGTAATGAGAATCATTAACGAGCCAACTGCAGCTGCTATTGCT 94 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| || | || |||| ||| | || | |||| | || | || ||||| ||| Sbjct 93 TATGGTCTTGATAA---GAAAGGAACTGGCGAGAGAAATGTATTGATCTTCGATTTAGGT 37 Query 451505 GGAGGAACTCATGAT 451519 || || ||| |||| Sbjct 36 GGTGGTACTTTTGAT 22 >seq853 Length=1605 Score = 152 bits (168), Expect = 2e-31 Identities = 232/330 (70%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||||||||| || ||| ||| ||||| || | |||| || |||||| Sbjct 692 AAAATGAAAGAAACTGCCGAAACTTATCTTGGTAGAGGTGTAAAGCATGCTGTTATTACT 633 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| || |||||| | || || ||||||||||| ||||| || ||| || Sbjct 632 GTGCCAGCTTACTTTAATGATTCTCAGCGTCAAGCAACTAAGGATGCTGGCTCTATAGCA 573 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || |||||||| |||| |||||||| || |||||||| ||||| ||||| ||| | Sbjct 572 GGCTTAAATGTAACAAGAATCATTAATGAGCCAACAGCAGCGGCTCTTGCATACGGAAT- 514 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 ||||| || |||| | |||| || ||| | |||||| || ||||| ||| Sbjct 513 GGAAA--------AAGCAGATGGCAAAACAATCGCAGTTTATGATTTGGGAGGAGGTACT 462 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 |||| |||| | | ||| | || || |||||||| || ||||| |||||| Sbjct 461 TTCGATATTTCTATTTTAGAGATTCTTGGCGGAGTGTTTGAAGTTAAAGCAACTAATGGT 402 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGAT 451603 | ||| |||||||| ||||| ||||| Sbjct 401 AACACTTCCCTAGGAGGAGAAGACTTTGAT 372 >seq1457 Length=4574 Score = 140 bits (154), Expect = 1e-27 Identities = 299/443 (67%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 364565 TATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAA 364624 ||||||| |||| | ||||| || |||||| ||||||||| | ||| || | || Sbjct 1320 TATTCCAAATTTATTAGATGGTTTAAAACCTGGACAAAGAAAAGTACTTTTTGCAACA-- 1377 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGA 364684 ||||| | | || | || || | ||||| || |||||||| |||| ||| |||| Sbjct 1378 TTTAAAAAAAAGCTTAATA-ATGAACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGA 1436 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACA 364744 | ||||||||||| || || || || | | || || ||||| || Sbjct 1437 ACATAGTGCTTATCATCATGGAGAATCATCATTGCAAAGTACTATTGTTAATATGGCTCA 1496 Query 364745 AAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCG 364804 |||||||||||||||||||||| ||||| || |||||||| || |||||||| ||| | Sbjct 1497 AAATTTTGTTGGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAG 1556 Query 364805 AGTAATGGGAGGTAAAGATTC---TGCCAGCCCACGTTATATTTGGACCAAACTTGAAAA 364861 | | || || |||||| | ||| | |||||||| | || || || || Sbjct 1557 AAAAGAAGGTGGAAAAGATGCAAGTGC---TGCTCGTTATATATTTACTAAGCTATCTAA 1613 Query 364862 AGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGA 364921 | | | ||| || || | | | ||| |||| | |||| |||| | ||||||| Sbjct 1614 ATGGACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGA 1673 Query 364922 TGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATGG 364981 |||| | |||||||| || ||| |||| || ||||| |||||||| |||||||| Sbjct 1674 TGGACAACAAATTGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAATGG 1733 Query 364982 AGCAACAGGCATTGGTACTGGTT 365004 | || |||||||| |||| Sbjct 1734 TACTGATGGAATTGGTACAGGTT 1756 Score = 134 bits (148), Expect = 5e-26 Identities = 401/597 (67%), Gaps = 40/597 (7%) Strand=Plus/Plus Query 363743 AGGAATTCCTAAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGG 363802 |||||| || ||||| |||||||| || |||| || | || || | |||||| Sbjct 510 AGGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCTAAAAAATGTAC 569 Query 363803 A-TTATATTTAGCAGAGGGAGATTCTGCTCT---TTCTATGATTCTGTCAGGGTTATCAA 363858 ||||| ||| | || || ||||||||| |||| || ||| |||| ||||| | Sbjct 570 TCTTATACTTA-CTGAAGGTGATTCTGCTAAAACTTCT-TG--TCTTGCAGGATTATCTA 625 Query 363859 GTAAAGATAGAAATTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAG 363918 | | |||| | | || ||| | ||||| || || ||| | |||||||| |||| Sbjct 626 TTGTTGGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAG 685 Query 363919 AAGCATCAGTTAAACAAATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAG 363978 |||| ||| |||||||| || || |||| ||| ||| ||| || ||||| || | Sbjct 686 AAGCTTCATTTAAACAACAAATTGGTAATGTTGAAATACAAAATATTCTTAAAATATTGG 745 Query 363979 GATTACGTAATGAATTTAAATATGAAATGGATGAAGAATTTAATACTTTAAGATATGGAA 364038 ||||| ||| || | |||||||| | ||| | | | ||| ||||||||||| Sbjct 746 GATTAGGTATTGGACAAAAATATGATA---ATGGACCAGTCAAT---TTAAGATATGGTT 799 Query 364039 AAGTAATAATTTTATGTGATTCAGATGTAGATGGAAGTCATATTAAGGGACTAATTTTAA 364098 |||| | | |||| |||| ||||| ||||||||||| ||||| ||| | | Sbjct 800 CTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATTATTA 859 Query 364099 ATATGTTTCA-TAGTATGTGGCCTAATCT-TTTAAAAAGAGAAGGTT-TTATTACAACTA 364155 || | | || || ||| ||||| | | | || | ||| | || ||| |||| | Sbjct 860 ATTTAATACATTATTAT-TGGCCAAGTTTAATTCATTTTAGAGGATTCTTAAAACAA-TT 917 Query 364156 TGAACACTCCAATTGTTAAAGCAACAAAAGGA---AAAGAAATATTAAAATTTTATAATT 364212 || | ||||| ||||||||||| | ||||||| || ||||| | || | || || Sbjct 918 TGTA-ACTCCTATTGTTAAAGCTAAAAAAGGATCTAATGAAATCT---CGTTCTTTACTT 973 Query 364213 TAACTGATTATGATAATTGGAGAAATGATAAT------AATACAAAAGGATATTATATT- 364265 || ||| ||||| | |||||||| ||||| || ||| |||| | ||| Sbjct 974 TATATGAATATGAACAATGGAGAAAGAATAATTCATCAAACTTAAATGGAT-GGAGATTC 1032 Query 364266 AAATATTACAAAGGATTAGGAACATCT---GATTCTAAAGAAGCTAAAGAATATTTT 364319 || ||||| ||||| ||||| |||||| || ||| ||| |||||| |||||| Sbjct 1033 AAGTATTATAAAGGTTTAGGTACATCTACAGA-TCT--TGAATTTAAAGAGTATTTT 1086 >seq1128 Length=1491 Score = 120 bits (132), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 96115 TACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAAATTGC 96174 |||| | |||| |||| || ||||||||| || |||||||||||| || ||||| || Sbjct 515 TACTGTTCTAAGAGTTAAAGCAGGGCTCCAGGCATCTTTTAAAATATCCAAGCAAATAGC 456 Query 96175 ACCTGT---AGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGAGG 96231 ||||| | || |||||| ||||| |||| || | ||| ||| ||| ||||| Sbjct 455 TCCTGTTTGACTAGAAATATTCGGATGCCAAATTCTTGTGATGAATTTAACTTTTGGAGG 396 Query 96232 CTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAGGG 96291 || |||||||| |||| || | | |||| || | |||||||| ||||| ||||| || Sbjct 395 CTCGTATGGATATTCTTTTGGTACAATAATATCAAGTTGGAATATACCACCTTCATATGG 336 Query 96292 TGTTCCTGAAGGGCC 96306 ||||||| ||| || Sbjct 335 TGTTCCTATAGGCCC 321 >seq2837 Length=6166 Score = 113 bits (124), Expect = 2e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118 || || ||||| | || || || || || || | || |||||| | || |||| ||| Sbjct 6166 TTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTATT 6107 Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178 || | | || ||| || || |||||||| || ||||||||||||||||| ||| | Sbjct 6106 GAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAACAGCGTCTG 6047 Query 391179 ATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAG 391238 || || | || || ||| | |||||||| |||||| | | || || ||||| | ||| Sbjct 6046 ATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAAG 5987 Query 391239 GATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | || | || |||||||||||||| ||||| Sbjct 5986 GAGTCCACTTTGCATTTAGTATTAAGACTTAGAGG 5952 >seq1839 Length=3417 Score = 109 bits (120), Expect = 2e-18 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 412289 TTCCAAAACGACCACTTCTACCAATTCTATGTATAAAAGTTTCATGATTTTTAGGTAAAT 412348 ||||||| | |||||||| ||||||| ||| ||| | ||| | ||| |||||| || Sbjct 3235 TTCCAAATCTGCCACTTCTTCCAATTCGATGGATATATAATTCTTTATTAATAGGTAGAT 3176 Query 412349 CATAATTTATAACTAATTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTG 412408 | || |||| |||||| || || | | | ||| || || | | | ||||||| |||| Sbjct 3175 CGTAGTTTACAACTAAGTTGACTTGTTGTACATCAATACCTCTTCCCCATAAATCTGTTG 3116 Query 412409 TTAATAAAATTCGTGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTTCT 412460 | | ||||| |||||||||||| |||||||| || ||| |||| || ||||| Sbjct 3115 TAATTAAAACTCGTGTTTTTCCTTCTCTAAACTC-TCT-CAATATTTCTTCT 3066 >seq705 Length=4387 Score = 107 bits (118), Expect = 8e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 248791 ATTTTCATTGGTCCTATGTTTTATTTGAGACTTAAACATATGGTACTTGATAAAGTTCAT 248850 ||||| |||| ||||| | ||| | | | ||||||||||| || |||||| | ||| Sbjct 1803 ATTTTTGTTGGGCCTATTTATTACCAAAAATTGAAACATATGGTTCTCGATAAAATGCAT 1862 Query 248851 TCCAGAAGTATGGGTCCTAGACAAGCTATTACTAGACAACCCATGGAAGGACGTTCTAAA 248910 | ||| | | ||||||||||||| | |||| |||||||||| |||||| | ||||| Sbjct 1863 GCAAGAGGAAGGGGTCCTAGACAAATTCTTACCAGACAACCCACTGAAGGAAGATCTAAG 1922 Query 248911 GATGGAGGTCTTAAAATTGGAGAGATGGAAAAAGATGCAATGGTTGCTCATGGA 248964 |||||||| || |||| || ||||||| |||| | || ||| ||||| Sbjct 1923 GATGGAGGACTACGTCTTGGTGAAATGGAAAGAGATTGTTTAGTAGCTTATGGA 1976 >seq3101 Length=7732 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/242 (69%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 420706 CCAAATGTATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTT 420765 ||||| |||||||| |||||||||||||||| ||||| |||||| | ||||| | Sbjct 2262 CCAAAAGTATCAATACCTCTTCTTCCAGCTCTTCCTGACATTTGTGTATATTCAGAA--- 2206 Query 420766 CGTAAGAA-TCTTCTA---CCACAATCATCATATTTAGATAAT-CCAGTAAATACAACAG 420820 | ||||| | ||||| | |||||||||| |||| | ||||||||||| || Sbjct 2205 -GAAAGAAGTATTCTATTTTTTCGTCCATCATATTT-TTTAATACTAGTAAATACAATAG 2148 Query 420821 TTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTA 420880 | | | || ||| | || | ||| | || |||||||| || || ||||| |||| Sbjct 2147 ATCTAGCTGGACAATTAATTCCCATAGATATTGTCTCAGTTGCAAATAATACTTTGATTA 2088 Query 420881 AtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATACCAGAATGAT 420940 || | | | | | | || ||| |||||||| | ||| |||| || ||| ||||| Sbjct 2087 ATCCTCTAGTAAATAAGATCTCAGTCATTTCTTTGATAATTGGAAGCATTCCACTATGAT 2028 Query 420941 GA 420942 || Sbjct 2027 GA 2026 >seq2927 Length=1520 Score = 87.8 bits (96), Expect = 7e-12 Identities = 158/231 (68%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || |||||| ||||| ||||| |||| ||||||||||| || |||||| Sbjct 2 AAGGATGCTGGTGCTATTGCCGGTTTGAATGTAATTCGTATTATTAATGAGCCAACAGCA 61 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || | ||| | | | ||||| | || || | ||||||||| Sbjct 62 GCAGCAATTGCTTTTGGTTTGG-------ACAAGAA--GGCTGAGAAGAGCATTTTAGTA 112 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 | ||||| ||||| || ||| |||| |||| | | | ||||| | || || || Sbjct 113 TACGATTTGGGTGGTGGTACTTTTGATGTTTCTCTCTTGACCATTGATAACGGTGTTTTC 172 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || || || || | ||||||||| ||| | |||||||| ||| | ||| Sbjct 173 GAGGTCGTTGCTACAAGTGGTGATACCCATTTGGGAGGTGAGGATTTCGAT 223 >seq2229 Length=620 Score = 87.8 bits (96), Expect = 7e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 420714 ATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTTCGTAAGAA 420773 ||||| ||||||||||| |||| || |||||||| ||| || ||| ||| || Sbjct 343 ATCAAGACCTCTTCTTCCTGCTCTACCACTCATTTGAATAAACTCTCCAG-AGTTAACAA 401 Query 420774 TCTTCTACCACAAT-CATCATATTTAGATAATCCAGTAAATACAACAGTTTTTGTAGGCA 420832 | | ||| | | ||||| |||| | | |||||| | ||| ||||||| ||||| Sbjct 402 TTCTGTACTCCTTTCCATCAAATTTTCTAAGTGAAGTAAAGATAACCGTTTTTGCAGGCA 461 Query 420833 TATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTAAtttttttGAAT 420892 | || | || | ||||||||| || || | || | |||||||| ||| | | | Sbjct 462 TGTTAATTCCCATAGAAAAAGTCTCTGTAGAGAATAGTACTTTAATAAATGACTCTCCAA 521 Query 420893 AAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATACCAGAATGATGA 420942 |||| | ||||| ||||| |||| || ||||| || ||| ||||||| Sbjct 522 AAAGGAGCTCAACTATTTCCTTTACAACAGGAAGTAAACCTCCATGATGA 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975635977967648