Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2903 116 4e-21 >seq2903 Length=4097 Score = 116 bits (128), Expect = 4e-21 Identities = 453/699 (65%), Gaps = 25/699 (4%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| ||||||| || | || ||||| | ||||| ||||| || ||||||| |||| Sbjct 935 GATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGG 876 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | |||||||||||||| | || || ||| ||||||| ||| | || || | | Sbjct 875 ATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTAT 816 Query 106053 CCTTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || | |||||| | | ||| ||| |||| | | || |||||||||||||| Sbjct 815 CTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT-AACTCCCCACATATCAAAT 757 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | || | || || ||||| | |||| || || | ||| | ||| Sbjct 756 TGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCGTATTTTTCT 697 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| || || || | ||| | ||| || |||||| || | ||| Sbjct 696 GCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTT 637 Query 106229 ATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACA-TCCGCGA 106286 | || ||| ||| | || || || | || || || || ||||| ||| || |||| Sbjct 636 AACTTCTTAGCTCCCTCAGACTCGTACGGCATA-CGAAGCATCATAAA-ACAGTCTGCGA 579 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||||| || | || | || | |||| | ||| || ||| | ||| Sbjct 578 GCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGATTTT---TTACACTCTT 522 Query 106347 CGGGATAAAAATTTC---TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 | || || ||| || |||||| | | || | ||| | |||| | ||| || | Sbjct 521 TGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAA 462 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| | | || ||| ||||||| || | | || || || | ||||||||| Sbjct 461 CTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGC 402 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| ||| || || || || ||| | ||||| |||| ||||||| Sbjct 401 CAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTG 342 Query 106524 TACACAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TTTGTT 106578 | || ||| ||| ||| ||| || |||||||| || |||||||| || | || Sbjct 341 TGCATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 286 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||| ||||| || || || | || ||||||||||| Sbjct 285 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956787781440