Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2559 244 1e-59 seq1220 217 2e-51 >seq2559 Length=3356 Score = 244 bits (270), Expect = 1e-59 Identities = 587/868 (68%), Gaps = 45/868 (5%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 1737 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC-AATTCATTCCTATTAA 18848 | |||||| || ||||||| ||||||| | ||| | || | ||||||| || || | Sbjct 1738 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAG-TCTCGAATTCATACCAATAAG 1796 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 1797 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 1856 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCA 18966 | |||||| | | | | || | ||| |||| | || ||||| ||| Sbjct 1857 TTGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCA 1914 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||| ||| || || || || | ||| || | ||||||||||||||| | |||||| Sbjct 1915 AAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 1974 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085 || ||||| | |||||| | ||| || || | | |||| | | |||||||| | || || Sbjct 1975 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCC 2033 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAAC-TAGCATCATTATTATGAATCC 19144 ||| || || || ||| | |||||| || || | || ||| ||| |||| Sbjct 2034 TTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGC-TCAGAATTC---ATCC 2089 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| |||||| || || |||||||||||| | || ||| | |||| Sbjct 2090 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT---------TCAATATGAG-AAATT 2139 Query 19205 GATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGT 19255 | | || | | ||| || ||||||| | || |||||||||||| | || Sbjct 2140 GCTTCAAA-GAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGA 2198 Query 19256 ACA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 | | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| ||||| Sbjct 2199 ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTC 2258 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 2259 CGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACT 2318 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGT 19430 || ||||| |||||||| |||| ||| ||||||||| ||||| ||| |||| Sbjct 2319 TGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCT----TTAAGAC 2374 Query 19431 ATTCC-AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 |||| |||| || |||||| | || ||| | ||||||| |||||| || || | Sbjct 2375 TTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTT 2434 Query 19490 CTGCTTTTTTATACATGTTCCATATATC 19517 | |||||||||||||| ||| ||||| Sbjct 2435 CAGCTTTTTTATACATTGACCAAATATC 2462 >seq1220 Length=885 Score = 217 bits (240), Expect = 2e-51 Identities = 406/592 (69%), Gaps = 6/592 (1%) Strand=Plus/Minus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| || || |||| | | | ||||| ||| || | | |||| | ||||| || Sbjct 854 TCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGC 795 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || ||||| ||||| || ||||| || || || |||||||| ||||| || ||| Sbjct 794 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 735 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || | |||||||| | | ||| || | | ||||| ||| | ||||| ||||| | Sbjct 734 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 675 Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503 ||||| ||| | |||| |||||||| | || | || | |||||| || | ||| Sbjct 674 ATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTA 615 Query 48504 G--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 || || | ||| ||| || || ||| | || || | ||| ||| ||| | Sbjct 614 CTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 557 Query 48562 TATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTG 48621 | | | || ||||||| |||||||| || | ||| ||||||||||| | ||| | Sbjct 556 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGG 497 Query 48622 GAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTA 48681 | | ||||||| |||| |||| | |||||||| | ||||||||||| ||| || | Sbjct 496 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 437 Query 48682 TATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 |||| | ||| ||||| ||| || ||||| | | || ||| |||||||| |||| Sbjct 436 TATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 377 Query 48742 TTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGT 48801 |||||| | ||||| | |||||| ||| |||| | ||||| || ||||||| | || Sbjct 376 CTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGT 317 Query 48802 ATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTTATGTT 48852 || ||| || || | | ||| |||| |||||| |||||||| ||| || Sbjct 316 ATTCAAAATCCTT-TGAAAAATCAATTTTTGAATTAATTCTTTCTCTATTTT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562085922171840