Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2559 244 1e-59 >seq2559 Length=3356 Score = 244 bits (270), Expect = 1e-59 Identities = 590/883 (67%), Gaps = 39/883 (4%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||||||| ||||||| ||||||| || || || || |||| Sbjct 1605 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 1664 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| ||| ||||| ||||||| |||||||| || || || | | || | Sbjct 1665 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 1722 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | || | || | ||||| ||||||||||| || |||| ||| ||| | Sbjct 1723 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA 1782 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109 || |||||||| || | || |||| | || |||||| | |||| | | ||| Sbjct 1783 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 1842 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163 || ||| |||| | | || | | | || | | || ||||||| | Sbjct 1843 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 1893 Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | | |||||| ||||||||| ||| | ||||||||| | ||| || | |||| Sbjct 1894 GCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 1953 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 |||||||| || | ||| ||||| | || | |||||||| |||||| ||||| ||||| Sbjct 1954 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 2012 Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 | | |||||||| | ||| |||||||| || ||| | | || | | | | |||| Sbjct 2013 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 2072 Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | |||||| |||||||| ||| ||| ||||| || ||| ||| ||| Sbjct 2073 TCGC------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTC 2126 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| ||||| | | ||||| | | || || ||||| |||| Sbjct 2127 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATC 2186 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| | Sbjct 2187 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 2246 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 |||||||| | || ||| | || ||| || | ||||||||||| |||| Sbjct 2247 CATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 2306 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633 || |||||||| || |||||||| || | ||||||||| ||||||||||||||| || Sbjct 2307 AATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTC 2366 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693 ||| | | ||| |||||| || |||||| || ||||| ||| ||| ||| Sbjct 2367 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCA 2423 Query 37694 AAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 ||| || || ||||||||| | ||||||||| ||| Sbjct 2424 AAACGACGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 2466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592292692706240