Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1220 116 2e-21 seq2903 95.1 6e-15 >seq1220 Length=885 Score = 116 bits (128), Expect = 2e-21 Identities = 260/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Minus Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037 |||||| ||||| |||||||||||||| | | || | || || | || ||| ||| Sbjct 861 TCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTG 802 Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 ||| || || ||||| || |||| |||||| | || |||||||||||||| | || Sbjct 801 CCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATA 742 Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || ||||| ||||| |||| || ||| |||| ||||||| | || || ||||| Sbjct 741 CCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGT 682 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA-TG-AATACCGATTCCACCA 26215 | |||| | || || || |||||||| | || || | || | ||||| Sbjct 681 TCCTCGAATATATGAACCAGTTCCTCTAATAT--TACTCACTGCCACCCCAAGACCACCC 624 Query 26216 GCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCA 26275 || || ||| ||| || | | | ||| || || || || ||||| ||| Sbjct 623 GCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCT 564 Query 26276 CCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAAT 26335 || || | | |||||||||||| || | ||| | | | || ||||||||||| Sbjct 563 TCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAG 504 Query 26336 AATGTCGGTGTAGCATGAGTATAATAT 26362 | ||| ||||| ||||||||| ||||| Sbjct 503 AGTGTGGGTGTTGCATGAGTAAAATAT 477 >seq2903 Length=4097 Score = 95.1 bits (104), Expect = 6e-15 Identities = 305/465 (66%), Gaps = 20/465 (4%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 || || | |||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 1281 GTCCTTAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 1222 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || ||||||| ||| || ||| | | | ||||| ||||| | ||| |||||| Sbjct 1221 GATAACTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACA 1162 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTT 24874 | | ||||||||||| | ||||| | || || | || || | | || Sbjct 1161 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTC 1102 Query 24875 TTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGAT-CCATTTTC 24933 || || ||| ||| || ||||| | |||||||||| || | ||||| | Sbjct 1101 TTATAAAGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAA-TGCTGCCATTATT 1043 Query 24934 TCTCAATAG-ATTC-----AATCTCAT-ATTCGGTGTCCAAAGATTAATTTTTTCAAGAT 24986 | ||||| |||| || | || || | | || ||| | | | | || Sbjct 1042 TG-CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGT------AAAT 990 Query 24987 CTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATA 25046 | | | ||| || ||||| | || || || ||||| | ||||| | ||||| Sbjct 989 CATTTAGCAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGA--TGATA 932 Query 25047 A--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGC 25104 | ||| || || ||||| ||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 931 AATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGC 872 Query 25105 TGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 |||||||||| | ||||||||| ||||| | | ||||| ||| Sbjct 871 TGTTGGCATTGGAGATATTAATAGAGAATTACGAATACCATGTTT 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253029958740200