Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2559 203 5e-47 seq2837 118 2e-21 >seq2559 Length=3356 Score = 203 bits (224), Expect = 5e-47 Identities = 575/865 (66%), Gaps = 33/865 (4%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| | || |||||||| || || || |||| | ||| || | | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAAT 17983 ||| ||||||| ||||||| || || |||||| ||| || | | | | Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 1737 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| | ||| || || | |||||||||| | || Sbjct 1738 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAG 1796 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| ||| || ||| | | | || | ||||||| ||| ||| || Sbjct 1797 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 1856 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| |||| ||| |||||| | ||| | | || ||||| |||||| || Sbjct 1857 TTGTTGTACTCTAGGAGCTGGTAATTTAA-ATTTAAGGGCTTT--ATATATTAAACAAGC 1913 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 |||||||| || | ||||||||| | | || ||| ||| ||| ||| || | || | Sbjct 1914 AAAATCAGCATGGAGACCTTCATCAC-GACTAATAAGTTCATTAGAAAATGTGAGTCCAG 1972 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 1973 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 2032 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 | ||||| |||| ||| | || | ||||||||||||| || |||||| Sbjct 2033 CTTCAACAGCACA-GAATCCAATAATTCTTTCAGCAAAA-------GATCGCTCAGAATT 2084 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGT--ATACTCTCTATAGCA 18394 |||||||| |||||||||| ||| |||| | ||| || || Sbjct 2085 CATCCATTTAGTTGCCCATTCTGCTTTCTTTTT--TACAGCTTCAATATGAGAAATTGCT 2142 Query 18395 TTAAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | || | | ||| | |||||| || | ||||| | || || | || |||| Sbjct 2143 TCAA--AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAAT 2200 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | ||||| |||||| ||| |||| || |||||| |||| || |||||| || | Sbjct 2201 AAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCG 2260 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||| || || ||| || || || | || || || |||| ||||| ||| | Sbjct 2261 GTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTG 2320 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 || || ||||| ||||||||||| || |||||| ||||| || || ||| | | || Sbjct 2321 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCC 2380 Query 18633 ATTCATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 | || |||| |||||| |||||||| |||||| | |||||| || | ||| || Sbjct 2381 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 2439 Query 18692 TGTTTGTACATTTTATAAATATCTT 18716 | ||| |||||| ||||||||| Sbjct 2440 TTTTTATACATTGACCAAATATCTT 2464 >seq2837 Length=6166 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || || ||||| || || ||||| ||||| ||| ||| |||| |||| Sbjct 6166 TTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTATT 6107 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || || ||||| || || || ||||| || ||||| | || Sbjct 6106 GAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAACAGCGTCTG 6047 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| || ||||| | |||||| |||||| |||| || || ||||| || Sbjct 6046 ATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAAG 5987 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 ||| | || | |||||||| |||||| | ||||||||||||| Sbjct 5986 GAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGTGTAA 5944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731842212809600