Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2559 172 1e-37 seq2837 149 1e-30 >seq2559 Length=3356 Score = 172 bits (190), Expect = 1e-37 Identities = 483/732 (66%), Gaps = 28/732 (4%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCAC-AATTCATACCCAATA 49707 ||||||||| || |||||||||| |||||| | ||| || || | |||||||||| |||| Sbjct 1737 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACC-AATA 1794 Query 49708 ATTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 | | || | || | ||| || ||| | | |||| | ||| ||||||| | || Sbjct 1795 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 1854 Query 49767 atcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaAC 49824 || | || || | | || ||||||| |||||| || ||||||||||| Sbjct 1855 AT--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAAC 1909 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | |||||||||| ||| | ||| || || | | |||| ||||||| ||| || | || Sbjct 1910 AAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 1969 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 | ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | | Sbjct 1970 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 2029 Query 49945 TACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 | || || ||| | || ||| | || |||||| | |||| || ||| ||| Sbjct 2030 TTCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAG---ATCGCTCAG--AAT 2083 Query 50004 --ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||| || | ||||| |||||||| ||||| | || |||| || |||| Sbjct 2084 TCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTT 2143 Query 50062 TAAATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 ||| | ||||| ||| | || | ||| ||||| Sbjct 2144 CAAAGAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATA 2201 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 ||||| ||||| ||| |||| |||||||| | |||| | ||| ||||| | Sbjct 2202 AGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGG 2261 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 || | ||| || ||| | | |||| || || |||||||||||| ||| Sbjct 2262 TATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGC 2321 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 || |||||||||||||| ||||| ||||||||| ||||| ||||| | | ||||||| Sbjct 2322 AGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCA 2381 Query 50300 AGATTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 | | | ||| |||| || ||| | |||||| | |||||| || ||| | | | Sbjct 2382 ATCTCTAGTATC--TTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 2439 Query 50358 TTTTTATACATT 50369 |||||||||||| Sbjct 2440 TTTTTATACATT 2451 >seq2837 Length=6166 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | ||| |||||||| | |||||||||||| ||||| | ||| || |||||| || Sbjct 5942 AATTACACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTA 6001 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||||| |||| |||| |||||||| || ||||||||||| | | ||||||||| Sbjct 6002 GTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATC 6061 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 6062 AGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGG 6121 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 ||| ||||| | || ||||| || || ||||| ||||| | ||| Sbjct 6122 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAA 6166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984438929955600